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Name : kdpD (SERP2489) Accession : YP_190032.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Unknown Product : sensor histidine kinase KdpD Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2205 EC number : 2.7.3.- Position : 2546845 - 2549514 bp Length : 2670 bp Strand : + Note : identified by similarity to EGAD:18674; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702 DNA sequence : ATGGAAAGTACATATAAAAAAAGAGGGAAACTTACCATTTATTTAGGCTATAGCCCAGGGGTAGGTAAAACGTATGAAAT GTTATCAAATGGTATTGATCAGTATCAAGAAGGTGCAGATATTAAAATTGGTTATATCGAACCCCATCAACGCCCTGAAA CCAATGCACTGGTTCAACAATTGCCTGAAATTTCGACCTCCAGCCGTAAATTTGGCAGCCACACCTTTCACTATATAGAT GTCTCTAAAATCATAGAAGCTAATCCAGATGTGGTCTTAATTGATGAACTAGCACATACAAACATTTCAAAAGAGCGCCA TTTAAAACGTTATAAGGATATAGAAGAAATTCTATCGCATGGTATCGATGTCTGGACAACACTCAACATCCAACATATCG AGAGTCTAAGCGGACAAATTGCGTTAATGACAGGTATTCAAGTTACAGAACGTGTGCCCGACCAATTCATTACGTCAGCA GATGCCTTTGAAGTTGTGGATATTTCACCAAATATGTTGATTCAGCGCCTTAAAGCAGGAAAAGTATATAAAAAAGAACG CTTAGAAACAGCCTTTTCTAATTTCTTTACGTATGAAAATCTGACAGAGCTGCGTGAACTTACACTCAGAACTGTCGCAG ATATTATGAGTCAAAAAGGACAACAATATAAAACTAAACATACCGACATTACACCGCATATTGCGGTAGCTATCAGCGGC AGTATTTATAACGAACGGGTCATACGAGAAGCAAGACGTGCTGCCTATAAAGAACATGCTAAATTCACAGCTGTGTATAT TGATGTCTTTGAGACACCGTCAGAAAGCAGAAAACAAGATCATTATGTCCATAAAAATCTAATGCTCGCCAAAGCGTTAG GTGCAGAAATCAAAGTGTTGTATGCACAAGATATTGCGAAAGCGTTAACCGATTGGTGTGATCTCGCTTTTGTGACGAAG CTAGTCCTTGGACAGTCAGAACAGCCACGTTGGAAAGATTACTTTAAACAGTCACTCATTGAACAAATTAATCACGTACC ACACCATTTCAAGTTAGAAATTGTACCGATTCATTATATTCATTCAGACAAACCTACAAATACACCTAAGCAAGCTCAAA AATCCTCTCGTTTAACTGTAGAGATTATGAAGATGCTTGTAATTCAAACGATCTGTGTCTTGCTCGGTATATGGGTTTAC AACTTAGATAAAAGCGAATCCAGTGCCATTATCTTGCTGATGTTCTTTATCGGTATTATCGTGCTTTCTATTTGGACCCA ATCCTATTTAATCGGATTCTTTGCGTCTATCTTAAATGTGTTTGTTTTTAATTATTTCTTTACGGTGCCAAGATTCACTT TAGAAATGTATCGCTTTGAATATCCGATTACGTTTGCGACCAGTATTTTTGCTAGTATCTTTACGAGTGCCATCTTAAAG AATTTAAAACATCAGCATTCCTTAACAGAACGGCAGTTATATCGGACCAATATTATGCTGCAATTTAACCAGTCCATTAA AGAATCTTATTCAATTGAACGCTTATTAAATATTGCTGGTGATCAGATTCATCAGCTACTCAATCAGGATGTCACGGTAT TCTTAATTCAAAGTAAGAAAGTCGCTGCTTCCAACTCATTTGGAAACAGAAGCATTTCAAGCTCAGATAAGACACATGAT GCTGAGACATTGAGCTGGGTCATTGAAAATGAAAGCCGTGCCGGTAAATTAACCGATACCTTTCCTGGCAGTAAATTTTT GTGTATTCCCATTGGCACAAATCCAGTCAAAGGTGTGATTTCTATCCGCTTCACCGACGAAACTTACATCGACACCTATG ACAATTCAATATTAGACTCTATGTTGAACGATATTACCCTGGCAATAGAGAATGTGGATCTATTAAAACAAACCAGACAA TCCATATTGAAAGCTGAACGAGAAGCCACACGTTCAAACTTCTTGCATTCAATTTCACATGATATTAGAACACCACTGAC TTCCATTATGGGCAACTTAGATATGCTGAAATACCATAACGAGCATTTAAACGATCAACAACAAGCAGAACTCTTAACTG CTTCTTATGGCGAAGCACAATATCTGCATACCTTAGTCACAAATATTTTATCTTTGACTAAGTTAGAAAGCTCTGACATT CAAATACAACGCACCCCTTATTTAGTAGAAGAACTTCTAGAAGAATTTGAAGAAGGCCTCATACGCAGACACCAAGCAAA TCATGTCATTATTGAAAATGAGGATGACGCTTCACTCATTAATATCGACAGTAAATTAATACTGCAAGTGCTATTCAACC TTATCGATAATGCTTTAAAGCATGCAGAATCACATTCTGAAATAAAACTGCACGTTCAACATGAAACAAACAAAATAAAA TTCGAAATGATAGATTGCGGAAAAGGTATTCCAGAAGAAGAACGTCAATTGATTTTTAATCCCTATTATTCAGGAGACAA CTTTAAAGACAATAAAAAAGATAGTTTGGGATTAGGGCTCTATTTAGTACAACTCATCTTGAAACAACACAACAGTGAAT TAGAATATCAACCGAATACACCACAAGGCAGTATTTTTTATTTTTATTTGACTGTTAATCCAATTGAAATGGAGGGAGCC ATGGATGAAAACAACATTATTGGTCGTTGA Protein sequence : MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFGSHTFHYID VSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSA DAFEVVDISPNMLIQRLKAGKVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDWCDLAFVTK LVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVY NLDKSESSAIILLMFFIGIIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSISSSDKTHD AETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQ SILKAEREATRSNFLHSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHVQHETNKIK FEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGA MDENNIIGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpD | YP_190032.1 | sensor histidine kinase KdpD | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| SAR0069 | YP_039537.1 | sensor kinase | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| kdpD | NP_370595.1 | sensor protein KdpD | Not tested | Type-II SCCmec | Protein | 0.0 | 99 |
| kdpD | NP_373307.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 99 |
| SH0032 | YP_251947.1 | hypothetical protein | Not tested | SCCmec | Protein | 0.0 | 99 |
