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Name : hsdR (SERP2474) Accession : YP_190017.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Unknown Product : type I restriction-modification system, R subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2527339 - 2530131 bp Length : 2793 bp Strand : - Note : identified by similarity to EGAD:10320; match to protein family HMM PF04313; match to protein family HMM TIGR00348 DNA sequence : ATGGTTTATCAAAGTGAATATGCATTAGAAAATGAAGTGCTTCAACAACTTGAAAATTTAGGATATGAACGAGTAAACAT ACATAACGTTGAACAATTACATGATAATTTTCGTACTATAATTAATGAACGTCATAAGGAAAAATTAAATGGAAAACCCC TAACAGACCGTGAGTTTGAACGTTTAATGACGGGGATTAACGGTAAATCTGTATTTGATAGTGCGATGCAATTACGCGAT AGTTATGTACTTAAGCGTGATGATGATACTGATTTATACCTAAATTTCATGAACTTAAAACAATGGTGTCAGAATAAATT CCAAGTAACCAATCAAATCAGTGTGAAAGATAAATATAAAAGCCGTTATGATGTGACAATTTTGATTAATGGCTTGCCAT TAGTACAAATTGAGTTAAAACGAAGCGGTGTAGCAATTACCGAAGCATTTAATCAAATAGAACGATATCGTCGTCAAAAC TATACTGGTTTATTCAGATACATACAATTATTTGTTGTTAGCAATAAAATGGAAACGCGCTACTATGCCAACAGTGATCG TGAAATTTTCAAAGGACAAATGTTTTATTGGAGTAATGAACAAAATGAGCGTATTAATTATCTTAAAGACTTTATTGAAG ATTTCTTAGAATCATGTCACATTTCTAAGATGATTAGTCGTTATATGGTCGTCAATGAAACAGACAAATTTCTAATGGCA TTACGTCCTTATCAAGTATATGCAGTGGAAGCTATTTTAAATCGTGCGTTAGAAACAAATAACAATGGTTACATTTGGCA TACAACAGGTAGTGGTAAAACGCTGACTTCGTTTAAAGCGAGTCAATTATTATCGCAAGAAGAAAATATTAAGAAAGTGA TTTTCTTAGTTGATCGTAAGGACTTAGATAATCAAACCTTAGCTGAATTTAATAAATTCCAAGAGGACTCAGTTGATTTT ACGGATAATACACGTAAATTATTGAAACAACTTGCCGATCCAACTTTACCTTTAATTGTTACAACGATTCAAAAAATGGC GAATGCAGTAAAATCCAATCATTCAGTAATGGAATCATATAAACAAGATAAAGTCATTTTTATTATTGATGAGTGTCATC GTACGCAATTTGGAGATATGCATCGTTTGATTAAGCAACATTTTGAAAATGCACAGTATTTTGGATTTACGGGGACACCA CGTTTTGAAGAAAACAAGAGTCAAGACGGGCGTGCTACAGCTGACATTTTTGATAAGTGTCTACATCACTATCTCATTAA AGATGCTATTAGAGATCATAATGTCCTTGGATTTTCCGTTGAATACAATCAAACATTTAATTCACATGAAGATTTAGATG AAGAATATATTTCTAAAATTAATACGTCGGAAATTTGGATGGCAGATGAACGTATTGAAGCTGTTTGTCGACATTTGATT TCAAATTATCATAAGAAAACAGATAACGGAAATTATACATCTATGTTTGCGGTTCAAAGTATTCCAATGGCGATTAAATA TTATGATACCTTCCAAAGACTAAAAAACGAAGGTGTTCATGATTTAAATGTTGCAACTATTTTTACATATCAAGCCAATG AAGATGCGCAAGAGGATGAAAATCATGTTCATTCAAGAGAAGTTCTCGACCGCATTATGAATGATTATAATCAAACATTT AAAACGAACTATAATACGGATAATTTCGAAGGCTACTTTTCTGACGTATCTAAGCGTATGAAAGAAGTTGTTCGTGATGA CAAAATTGATATTCTTATCGTCGTTAATATGTTTTTGACTGGTTTTGACAGTAAGAAACTGAATACCCTTTACGTTGATA AAAACTTGAAGCATCATGATTTAATTCAAGCCTATTCAAGAACAAATCGTGTTGAAAAAGAACGTAAGCCATACGGTAAT ATTGTATGTTATCGTGATTTAAAAAAACAAACGGACGAAGCCATTGAAATTTTCTCTCAAACAGATAATACAGATACGGT GTTAAGCTTATCTTACGAAGAATACTTAGATAATTTCAAAGATATCTTACAAGACGTTTTTCAACTAGCGCCAACGCCTT TAGATGTCGATAAACTAGAGGCTGAAGATTTAAAAAAAGAGTTTGTCATTTCATTCCGTGATTTATCAAATACACTAATT AAACTAAAAACCTTTGATGAATTTCAATTTACAGAAGACGAACTTGGCATTGCAGAACAAACCTATGAAGATTATAAAGG TAAATACTTAAATATTTATGAAGAAGTCATGCGTGGTAAAAAAGTGGATGGTGAAGAGGGTGTTTCCGTTTTAGATGATA TTGATTTCCAAGTTGAATTAATGCGTAATGATTTGATTAATGTGAAGTATATTATGGATCTCATTGGTCAAATTAATCTA TCTGATGCAAAAGCACGCGATGAAAAACGTCATCAAATTCATAAGTTGTTAGATAAAGCAGATGATCAACAATTACGTTT AAAAGCTGATCTCATTCGTAGCTTCTTAGATAAAGTTGTGCCATCACTAAAAGAAGATTCTGATATTAATGAAGCGTATT ATGAATTTGAAGACAAAGAAAAAACGAAAGAAATTGATGCATTTGCAGAACAAAAAGCCTTTTCTGCTATGTTACTTAAC GAAGCTGTTAATGAGTATGAATATAGTGGTAATATTGACCGTAAATCTATCGGTCAAAATATTTCAGAACCTTTTATGAA ACGTAAAAGAAAAACCGACCAAATTATACAGTTTATCGAAGATACAGTAGAAAAGTACGGTGTTGTCGAATAA Protein sequence : MVYQSEYALENEVLQQLENLGYERVNIHNVEQLHDNFRTIINERHKEKLNGKPLTDREFERLMTGINGKSVFDSAMQLRD SYVLKRDDDTDLYLNFMNLKQWCQNKFQVTNQISVKDKYKSRYDVTILINGLPLVQIELKRSGVAITEAFNQIERYRRQN YTGLFRYIQLFVVSNKMETRYYANSDREIFKGQMFYWSNEQNERINYLKDFIEDFLESCHISKMISRYMVVNETDKFLMA LRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVDRKDLDNQTLAEFNKFQEDSVDF TDNTRKLLKQLADPTLPLIVTTIQKMANAVKSNHSVMESYKQDKVIFIIDECHRTQFGDMHRLIKQHFENAQYFGFTGTP RFEENKSQDGRATADIFDKCLHHYLIKDAIRDHNVLGFSVEYNQTFNSHEDLDEEYISKINTSEIWMADERIEAVCRHLI SNYHKKTDNGNYTSMFAVQSIPMAIKYYDTFQRLKNEGVHDLNVATIFTYQANEDAQEDENHVHSREVLDRIMNDYNQTF KTNYNTDNFEGYFSDVSKRMKEVVRDDKIDILIVVNMFLTGFDSKKLNTLYVDKNLKHHDLIQAYSRTNRVEKERKPYGN IVCYRDLKKQTDEAIEIFSQTDNTDTVLSLSYEEYLDNFKDILQDVFQLAPTPLDVDKLEAEDLKKEFVISFRDLSNTLI KLKTFDEFQFTEDELGIAEQTYEDYKGKYLNIYEEVMRGKKVDGEEGVSVLDDIDFQVELMRNDLINVKYIMDLIGQINL SDAKARDEKRHQIHKLLDKADDQQLRLKADLIRSFLDKVVPSLKEDSDINEAYYEFEDKEKTKEIDAFAEQKAFSAMLLN EAVNEYEYSGNIDRKSIGQNISEPFMKRKRKTDQIIQFIEDTVEKYGVVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 0.0 | 59 |
