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Name : SERP2435 (SERP2435) Accession : YP_189980.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Resistance Product : metallo-beta-lactamase Function : - COG functional category : R : General function prediction only COG ID : COG0491 EC number : - Position : 2492057 - 2493385 bp Length : 1329 bp Strand : + Note : identified by match to protein family HMM PF00581; match to protein family HMM PF00753 DNA sequence : ATGTTTTTTAAACAATTTTATGATAAACACTTATCTCAAGCATCTTATTTAATCGGTTGTCAAAAAACTGGAGAAGCCAT GATTATTGATCCTATTCGTGACTTATCTTCATATATTCGAGTTGCTGATGAAGAAGGTTTAACCATTACTCATGCAGCTG AAACACATATACATGCAGATTTTGCTTCAGGAATTAGAGATGTTGCTATAAAGTTAAATGCTAGTATTTATGTATCGGGT GAAAGTGATGACACGTTAGGTTATAAAAATATGCCTAACCAGACTCATTTTGTTCAACATAATGATGATATTTATGTAGG AAATATAAAATTAAAAGTGCTTCATACACCTGGTCACACGCCAGAAAGTATAAGTTTTTTACTTACTGATGAAGGTGCTG GAGCACAAGTTCCAATGGGACTATTCAGTGGTGATTTTATTTTTGTAGGAGATATCGGTAGACCTGATTTACTAGAAAAA GCTGTTAAAGTAGAAGGATCATCTGAAATAGGCGCTAAACAAATGTTTAAATCTATTGAAAGTATTAAAGACTTGCCAAA CTACATTCAAATTTGGCCTGGCCATGGAGCTGGTAGTCCTTGTGGTAAATCTTTAGGTGCTATTCCAACATCTACTCTTG GCTATGAAAAACAAACAAACTGGGCTTTTTCTGAAAATAACGAAGCTACCTTTATCGATAAACTAATTTCTGACCAACCT GCACCACCACATCATTTTGCACAAATGAAAAAAATTAATCAATTCGGTATGAATTTATATCAACCTTATACGGTTTATCC AGCTACAAATACAAACAGATTAACTTTTGATCTCCGCAGTAAGGAGGCTTATCATGGTGGACATATTGAAGGTACAATCA ATATTCCATATGATAAAAATTTCATCAATCAAATTGGCTGGTATCTAAACTATGATCAAGAAATTAACTTGATTGGAGAA TATCACCTTGTTTCAAAAGCAACACACACCTTACAACTCATTGGATATGATGATGTTGCTGGATATCAATTACCTCAATC TAAGATTCAAACACGTTCCATTCATAGTGAAGATATTACAGGTAACGAATCACATATATTAGATGTACGTAATGATAATG AATGGAATAATGGCCACTTATCTCAAGCGGTTCATGTACCACACGGCAAACTTTTAGAAACAGATTTACCTTTCAATAGA AACGATGTTATTTATGTACACTGTCAGTCTGGCATTAGAAGTTCGATAGCTATTGGTATTTTAGAACATAAAGGTTATCA CAACATTATTAATGTAAATGAAGGTTACAAAGATATACACCTTTCTTAA Protein sequence : MFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNASIYVSG ESDDTLGYKNMPNQTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEK AVKVEGSSEIGAKQMFKSIESIKDLPNYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFIDKLISDQP APPHHFAQMKKINQFGMNLYQPYTVYPATNTNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEINLIGE YHLVSKATHTLQLIGYDDVAGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNR NDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIHLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SACOL0046 | YP_184956.1 | metallo-beta-lactamase | Not tested | Type-I SCCmec | Protein | 0.0 | 99 |
| unnamed | BAA86645.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 0.0 | 99 |
| unnamed | BAB83478.1 | - | Not tested | SCC 12263 | Protein | 0.0 | 96 |
| SAV0046 | NP_370570.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 1e-123 | 75 |
| SA0043 | NP_373283.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 1e-123 | 75 |
| unnamed | BAC57482.1 | hypothetical protein | Not tested | Type-IIIinv SCCmec | Protein | 1e-123 | 75 |
