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Name : clpC (SERP0165) Accession : YP_187761.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 169002 - 171455 bp Length : 2454 bp Strand : + Note : identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 DNA sequence : ATGTTATTTGGTAGATTGACAGAGCGTGCACAACGTGTGTTGGCACATGCACAAGAGGAAGCAATTCGTTTGAACCATTC TAATATTGGAACAGAACATCTTTTGCTTGGTTTAATGAAAGAGCCAGAAGGTATAGCAGCAAAGGTATTAGTAAGTTTTA ATATTACTGAAGATAAAGTCATCGAAGAAGTTGAAAAACTTATCGGTCACGGTCAAGAGCAAATGGGCACACTACATTAT ACACCGAGAGCAAAAAAAGTAATTGAACTGTCTATGGATGAAGCTCGAAAGCTACATCATAACTTTGTAGGAACAGAGCA TATACTATTAGGTTTAATTAGAGAAAATGAAGGTGTTGCAGCACGTGTATTTGCAAACCTAGATTTAAATATTACTAAAG CACGTGCCCAAGTTGTAAAAGCTTTAGGAAGTCCAGAAATGAGTAATAAAAATGCGCAAGCTAATAAGTCTAATAACACG CCTACTTTAGATGGATTAGCTAGAGATTTAACTGTTATTGCTAAAGATGGAACGTTAGATCCAGTCGTAGGACGAGATAA AGAAATTACTCGTGTAATTGAAGTTTTAAGTCGTCGTACTAAAAATAATCCTGTGCTAATTGGTGAACCCGGTGTTGGTA AAACAGCAATTGCTGAAGGGCTTGCGCAAGCAATTGTTAAAAATGAAGTACCAGAAACTTTAAAAGACAAACGTGTAATG TCATTAGATATGGGTACAGTCGTAGCTGGCACTAAATATCGTGGTGAATTTGAAGAAAGATTGAAAAAAGTTATGGAGGA AATCCATCAAGCTGGTAATGTTATTCTATTTATCGATGAACTTCATACTTTAGTTGGCGCTGGTGGCGCAGAAGGAGCAA TTGATGCATCTAATATTTTAAAACCTGCTTTAGCTCGTGGAGAATTGCAATGTATAGGTGCCACAACATTAGATGAATAT CGTAAAAATATAGAAAAAGACGCTGCATTAGAACGTCGTTTTCAACCAATTCAAGTGGATGAACCTACAGTTGAAGACAC GATTGAAATCTTAAAAGGATTACGTGACCGTTATGAGGCTCATCACAGAATTAATATCTCAGATGAAGCTTTAGAAGCGG CTGCTAAATTGAGTGATCGCTATGTTTCAGATCGTTTCTTGCCAGATAAAGCCATTGACTTAATTGATGAGGCAAGTTCA AAAGTTAGACTTAAAAGTCATACAACGCCAAGTAATTTAAAAGAGATTGAACAAGAAATTGATAAAGTAAAAAATGAAAA AGATGCTGCAGTTCATGCTCAAGAATTTGAAAATGCCGCTAATTTAAGAGATAAGCAATCTAAACTTGAAAAGCAATATG AAGATGCTAAAAATGAATGGAAAAATGCACAAGGTGGTTTAGATACTGCCTTATCTGAAGAAAATATCGCTGAAGTAATA GCTGGTTGGACAGGTATTCCTTTAACTAAAATTAATGAAACTGAATCAGATCGTTTATTGAATCTTGAAGATACACTTCA TAAACGTGTCATTGGACAAAACGATGCTGTCAATTCAATTAGTAAAGCTGTTAGAAGAGCTCGTGCTGGTCTTAAAGATC CAAAACGTCCAATCGGTAGTTTTATTTTCTTAGGACCTACAGGTGTGGGTAAAACTGAATTGGCTCGTGCTTTAGCTGAA TCTATGTTTGGTGAAGACGATGCAATGATTCGCGTAGATATGAGTGAATTTATGGAGAAACATGCTGTCAGTCGATTAGT TGGTGCACCTCCAGGATATGTAGGACATGATGACGGCGGTCAATTGACTGAAAAAGTTAGACGTAAACCATACTCTGTGA TTTTATTTGATGAAATTGAGAAAGCACATCCTGACGTATTTAATATTCTTCTACAAGTTTTAGATGATGGTCATTTAACA GATACTAAAGGTCGTACTGTGGACTTCCGTAATACTGTGATTATTATGACTTCTAATGTGGGAGCTCAAGAATTACAGGA CCAACGCTTTGCTGGTTTTGGAGGTGCTTCAGAAGGTAGTGACTACGAAACTGTCAGAAAAACAATGATGAAAGAATTAA AAAATTCATTCCGACCAGAATTCTTAAACCGTGTTGATGACATTATTGTCTTCCACAAACTTACAAAAGATGAATTAAAA GAAATTGTTACAATGATGGTAAATAAACTTACTCACCGTCTTTCAGAGCAAAATATTAATATTGTTGTTACTGATAAAGC GAAAGAAAAAATTGCAGAAGAAGGATATGATCCTGAATATGGTGCTAGACCACTCATTAGAGCAATTCAAAAAACGGTTG AAGATAATTTAAGCGAATTGATTTTAGATGGAAATAAAATTGAAGGTAAAGAAGTAACAATTGATCATGATGGTAAAGAA TTTAAGTATGATATTTATGAAATTACAGCTAAAAAAGAAACAACAGAATCATAA Protein sequence : MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGTLHY TPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKSNNT PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVM SLDMGTVVAGTKYRGEFEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEY RKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASS KVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYEDAKNEWKNAQGGLDTALSEENIAEVI AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE SMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLT DTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELK EIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHDGKE FKYDIYEITAKKETTES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_187761.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 71 |
| clpC | YP_187761.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 9e-164 | 53 |
