Gene Information

Name : xerD (SERP1060)
Accession : YP_188637.1
Strain : Staphylococcus epidermidis RP62A
Genome accession: NC_002976
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1105244 - 1106131 bp
Length : 888 bp
Strand : -
Note : identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899

DNA sequence : 
ATGAATACTATCATTGAAGAATATTTAAATTTCATTCAAATTGAAAAAGGATTAAGTAACAATACTATAGGAGCGTATCG
AAGAGATTTAAAAAAATATAAAGATTATCTTGAAGATAACAAGATTTCACATATCGATTTTATTGATAGACAAATTATCC
AAGAGTGTCTTGGACACCTTATAGATATGGGGCAATCTTCAAAATCTCTCGCAAGGTTTATTTCTACAATAAGAAGCTTT
CATCAGTTTGCATTACGCGAAAAATATGCTGCTAAAGACCCAACTGTTTTAATTGAAACACCCAAATATGAAAAGAAATT
ACCAGATGTGCTTGAAATAGACGAAGTAATAGCATTACTGGAAACGCCTGATTTAACTAAGAATAATGGATATCGTGATC
GTACGATGTTGGAGCTTTTATACGCCACAGGTATGCGTGTAACTGAAATTATTCAATTAGATGTTGAAGACGTAAACTTA
ATGATGGGATTTGTAAGAGTTTTCGGGAAAGGGAATAAGGAAAGAATCGTTCCCTTAGGAGATACCGTCATCGAATATTT
AACTACATATATTGAAACCGTAAGACCTCAATTACTCAAACAAACCACAACTCAAGCGCTATTTCTTAACATGCATGGAA
AGTCTTTATCAAGACAAGGCATTTGGAAAATCATTAAACAATATGGTTTGAAAGCTAATATCAATAAAACGCTTACACCA
CATACATTACGGCATTCATTTGCAACACATCTCTTAGAAAATGGTGCTGATTTAAGAGCCGTACAAGAAATGTTAGGTCA
CTCTGATATTTCTACAACTCAACTTTATACACATGTATCTAAATCACAAATTAGAAAAATGTATACGCAGTTTCATCCAA
GAGCTTAG

Protein sequence : 
MNTIIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDMGQSSKSLARFISTIRSF
HQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNL
MMGFVRVFGKGNKERIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTP
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 5e-54 43
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 5e-54 43