Gene Information

Name : arlR (SERP0989)
Accession : YP_188567.1
Strain : Staphylococcus epidermidis RP62A
Genome accession: NC_002976
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator ArlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1007068 - 1007727 bp
Length : 660 bp
Strand : -
Note : identified by similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACAAATATTTTAATCGTAGAAGATGAGCAAAATCTTGCTAGATTTATAGAGCTTGAGTTAACTCATGAAAATTATAC
TGTTGATATAGAGAATGATGGAAAGGCAGGTTTGGACAAAGCATTATCTAAGCCCTATGATTTATATATTTTAGACTTAA
TGCTTCCAAACATAAATGGTCTAGAAATTTGTAGACAAATTCGTCAAAAAACAACTACTCCAATTATCATCATTACTGCG
AAAAGCGAGACATATGATAAAGTAGCTGGGTTGGACTATGGGGCAGATGACTACATTGTAAAACCCTTTGATATAGAAGA
ATTGCTGGCAAGAATAAGAGCGGTATTGCGCAGACAGCCAGATAAAGATGTTTTAGATATCAATGGTATTATCATTGATA
AAGATGCCTTTAAAGTTACTGTTAATGGCCATCAATTAGAATTAACTAAAACAGAATACGATTTACTATATGTTTTAGCT
GAAAATCGTAACCACGTCATGCAACGTGAACAAATTCTCGATCACGTATGGGGGTATAATAGTGAAGTAGAAACGAATGT
CGTTGATGTTTATATTCGTTATTTACGTAATAAACTCAAACCTTTTAATAAAGAAAAATCCATAGAAACTGTACGTGGCG
TAGGGTATGTGATTCGATGA

Protein sequence : 
MTNILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPNINGLEICRQIRQKTTTPIIIITA
KSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRRQPDKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLA
ENRNHVMQREQILDHVWGYNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-34 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-34 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-27 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_188567.1 DNA-binding response regulator ArlR AE015929.1.gene1106. Protein 7e-93 99
arlR YP_188567.1 DNA-binding response regulator ArlR NC_007793.3914065.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_002758.1121390.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_010079.5776364.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_002952.2859858.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_007622.3794948.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_003923.1003417.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_013450.8614146.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR NC_002951.3238224.p0 Protein 8e-83 85
arlR YP_188567.1 DNA-binding response regulator ArlR HE999704.1.gene1528. Protein 1e-47 56
arlR YP_188567.1 DNA-binding response regulator ArlR AE000516.2.gene3505. Protein 2e-31 44
arlR YP_188567.1 DNA-binding response regulator ArlR BAC0125 Protein 4e-35 43
arlR YP_188567.1 DNA-binding response regulator ArlR NC_014475.1.orf0.gen Protein 3e-30 42
arlR YP_188567.1 DNA-binding response regulator ArlR NC_005054.2598277.p0 Protein 3e-30 42
arlR YP_188567.1 DNA-binding response regulator ArlR AM180355.1.gene1830. Protein 5e-29 42
arlR YP_188567.1 DNA-binding response regulator ArlR DQ212986.1.gene4.p01 Protein 2e-28 42
arlR YP_188567.1 DNA-binding response regulator ArlR AF155139.2.orf0.gene Protein 9e-32 42
arlR YP_188567.1 DNA-binding response regulator ArlR BAC0308 Protein 5e-32 42
arlR YP_188567.1 DNA-binding response regulator ArlR BAC0197 Protein 7e-32 42
arlR YP_188567.1 DNA-binding response regulator ArlR FJ349556.1.orf0.gene Protein 1e-29 41
arlR YP_188567.1 DNA-binding response regulator ArlR AF253562.2.orf0.gene Protein 6e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_188567.1 DNA-binding response regulator ArlR VFG0596 Protein 1e-34 45
arlR YP_188567.1 DNA-binding response regulator ArlR VFG1702 Protein 2e-27 43
arlR YP_188567.1 DNA-binding response regulator ArlR VFG1563 Protein 1e-27 42