Gene Information

Name : LMOf2365_2400 (LMOf2365_2400)
Accession : YP_014989.1
Strain : Listeria monocytogenes F2365
Genome accession: NC_002973
Putative virulence/resistance : Virulence
Product : iron compound ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2452029 - 2452820 bp
Length : 792 bp
Strand : -
Note : identified by similarity to SP:P49938; match to protein family HMM PF00005

DNA sequence : 
ATGAAATCAGCATTAGAACTAAAAAATGTTTCTTTCTCACGTAAAAGAGATTTCGAAATGAAAAACGTGAGCGCGAGTAT
TCCAGAAGGGAAAATCACTACGCTTATCGGTCCAAACGGCTCGGGAAAATCGACTATGCTGCGTTTGATGATGCGCCTTT
TGACACCGGATAGCGGGGAGATTTTCTTAAATGATAAAAACATTACTGAAATCCCATCTAAAGATTTAGCGAAAAAAATG
ACGATGTTATCACAAGCTCCAGAAGGTTTGGTAGATGTGATGGTGCATGATTTAGTGGCGTATGGCCGTTTGCCGCACCG
AAGCTGGCTCTCCACTTTGCAAGAGGAGGACGAAGCGGTCATTCACTGGGCTATTAAAGTGTGCAACTTAGAAGAATTGG
CTTATCGCCCGCTACATTCGTTATCAGGCGGAGAACGACAACGCGCTTGGCTCGCCATGGCTCTTGCACAAAAAACACCG
ATTTTATTACTAGATGAGCCCACGACTTATTTAGATATTGCGCATCAACTGGAGCTTTTAGATTTACTCGTGCATTTAAA
TAAAGAATATAATTTAACTATCGTGCTCGTTTTACATGATTTAAATCAGGCAGCAATTTACAGTGACCATGTTTTTGTAT
GCGAAAATGGACAATTAGTCAAAGATGGCTCGCCTACAGAAGTTTTCACGACAGAGCTTCTTCGCGAGGTTTTTCATATT
ACGGCGGATATTACCGAAAAAGACGGAAAGCAGCATATTCATCCACTTGCTTCGACTCGTTTTGAATATTAA

Protein sequence : 
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKM
TMLSQAPEGLVDVMVHDLVAYGRLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQLVKDGSPTEVFTTELLREVFHI
TADITEKDGKQHIHPLASTRFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-40 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-44 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-44 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-44 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-44 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-38 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-39 45
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-39 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_2400 YP_014989.1 iron compound ABC transporter ATP-binding protein BAC0164 Protein 2e-40 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_2400 YP_014989.1 iron compound ABC transporter ATP-binding protein VFG1042 Protein 2e-40 49
LMOf2365_2400 YP_014989.1 iron compound ABC transporter ATP-binding protein VFG0925 Protein 1e-34 43