Gene Information

Name : LMOf2365_0205 (LMOf2365_0205)
Accession : YP_012815.1
Strain : Listeria monocytogenes F2365
Genome accession: NC_002973
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 202870 - 203562 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGCCAAAACCGCTAATTGACATGAAAAATTTAACAAAAACGTATACGCTAGGCGGAGAAACTTTTAAAGCATTAGACGA
TGTTACTTTTACCGTTGAGCAAGGCGAGTTTTTATCCATCGTTGGTCCGTCCGGTTCCGGTAAATCCACTTTAATGAATA
TGATTGGTTGTTTGGATGTTCCGGATGAAGGCAGCTATCACCTTGATGATGTAGATGTTTTTAAACTGAGCGATAATAAA
CTATCCGAAATCAGAAATAAAAAAATCGGCTTTATTTTTCAGCAGTTTAATTTGCTTCCAAAATTATCTGCCTTTGAAAA
TGTGGAACTACCACTAATTTATGCAGGACTAAGTGTTTCTGCACGAGAAAAAGCCGCAATCGAATGTTTAGAAAAAGTAG
GCTTACTTGAAAAACGTAGAAACTTACCAACGCAACTTTCTGGTGGCCAACAGCAACGTGTGGCTATCGCAAGAGCACTC
GCCGGCAAACCGCAAATTTTGCTAGCAGATGAGCCAACTGGTGCGCTCGATTCGAAAACAGGTAAAGAAGTAATGGGAAT
CCTACAAGAATTGAATCGTGCTGGAAACACCATCGTTATGATTACGCATGATCCAACAATCGCCTCATACGGTACAAGAA
GTATCCGTATTCAAGATGGTAAATTATTCCATGAGGAGGCGACGCAAGCATGA

Protein sequence : 
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNK
LSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-61 56
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-44 49
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-42 48
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-45 46
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 4e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_0205 YP_012815.1 ABC transporter ATP-binding protein VFG0869 Protein 8e-22 45