Gene Information

Name : LMOf2365_1990 (LMOf2365_1990)
Accession : YP_014583.1
Strain : Listeria monocytogenes F2365
Genome accession: NC_002973
Putative virulence/resistance : Virulence
Product : iron compound ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2021990 - 2022814 bp
Length : 825 bp
Strand : +
Note : identified by similarity to SP:P49938; match to protein family HMM PF00005

DNA sequence : 
ATGAAAGACCTTCATACCGATAACTTACAAATTTCATACGACAAACGAATCATTGTTGATGGTTTAGATATAGCCATTCC
AGCGAATAAAATAACCGCTTTAGTAGGTGCAAATGGCTCAGGGAAATCGACTATTTTAAAAACGATGTCCCGCTTAATGA
AACCTAGCAAAGGCGCTGTGTATTTAGATGGCAAGACGATTCATAGTCAGCCAACGAGAGACGTTGCCAAACAACTAGCT
ATTTTGCCACAAAATCCTTCTGCACCTGATGGTTTAACGGTGTTTGAATTAATTTCTTATGGACGTTCCCCACATCAAAG
TAGCTTTAAATCGATTACCGCAAAAGATCGCGAAATTATTTTTTGGTCATTGCGCGTGACGAATTTAATGGAGTTAGCGG
ATCGACCAATTGATAGTTTATCAGGTGGACAACGACAGCGTGCATGGATTGCCATGGCGCTTGCCCAAGAAACAGATGTA
CTATTTCTTGATGAACCGACGACCTTTTTAGATATGACGCACCAACTAGATGTACTTAATTTATTGAAACAATTAAATCA
ATCAGAGAACCGCACAATTGTGATGGTTGTTCATGATTTAAATCACGCATCTCGTTACGCTCACCATATGATCACTATTA
AAGAAGGGAAAGTCATCGCAGAAGGAACACCAACCAATGTCATGACTGAACAAACTTTAGAGGATGTTTTTAATATCAAA
GCAGATATTTTAATTGATCCCCGCAGCGGTGTCCCTCTTTGCCTCCCCTACGAAACTTGCAACGGATGCGAAATTGTAAA
GGAGCTTGATTCCAGTGCCAAATAA

Protein sequence : 
MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLDGKTIHSQPTRDVAKQLA
ILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWSLRVTNLMELADRPIDSLSGGQRQRAWIAMALAQETDV
LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMITIKEGKVIAEGTPTNVMTEQTLEDVFNIK
ADILIDPRSGVPLCLPYETCNGCEIVKELDSSAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-59 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-59 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-52 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-53 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-50 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-50 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-56 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_1990 YP_014583.1 iron compound ABC transporter ATP-binding protein BAC0164 Protein 7e-53 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOf2365_1990 YP_014583.1 iron compound ABC transporter ATP-binding protein VFG1042 Protein 7e-53 45
LMOf2365_1990 YP_014583.1 iron compound ABC transporter ATP-binding protein VFG0925 Protein 6e-57 45