Gene Information

Name : TDE0625 (TDE0625)
Accession : NP_971239.1
Strain : Treponema denticola ATCC 35405
Genome accession: NC_002967
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 657393 - 658163 bp
Length : 771 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGCTTAGGATAGAGGATTTAAGCCTTTCCTACGGCGACAAACCTGTTGTTCAAAATTTAAACCTAAAGGTAAAAAAGGG
GCAGGTAGTTTCGATAATCGGGCCCAACGCTTCGGGAAAGTCCACCATTTTAAAAAGCATCGCAGGAATTATAAAACCCG
TTTCCGGGAAAATCTTTATCGAAGAAAAAGACATCTCAAAAATGGATTCCAAAAAACTCGCCCAAAAAGTTTCTATCCTT
TTACAGCAAAATAAAAACCCTGACGATATGAGTATTGAAGAATTGGTCTATTTTGGCCGTTATCCCCATAAAAAATGGTT
TGAGGGCTTTGAAGCTTCCGATCAAAAGATAATAGAAGAAGCTATGAAGCTTACAAATACATTTGCTTTGAGGGACAAAA
CCTTGGAAACTCTGTCCGGCGGCGAAAGACAAAGAGCTTGGATCGCTATGGCCCTTGCCCAAGAGCCTGATATCCTTTTG
TTTGATGAGCCGACCACCTATTTGGATCTGGCTCATCAAATAGAATTCTTGGAGCTTGTAAACCGTCTAAACAAGGAAAC
GGGGGTTACGGTAGTTTTGGTTCTTCACGACTTAAATCAAGCTGCCCGTTACGGCAACTACCTTTTTGCGATGAAAGAGG
GTAAAATTTTTGCCCAAGGCTGTCCCGAAGAGGTGTTGAATCCTCAAAATATTTTGAATATTTACAACATTGAAGCTAAA
ATCTTTAACGCTGCGGGCTATCCGGTTGTTATACCTGAAAGGAGATTGTAG

Protein sequence : 
MLRIEDLSLSYGDKPVVQNLNLKVKKGQVVSIIGPNASGKSTILKSIAGIIKPVSGKIFIEEKDISKMDSKKLAQKVSIL
LQQNKNPDDMSIEELVYFGRYPHKKWFEGFEASDQKIIEEAMKLTNTFALRDKTLETLSGGERQRAWIAMALAQEPDILL
FDEPTTYLDLAHQIEFLELVNRLNKETGVTVVLVLHDLNQAARYGNYLFAMKEGKIFAQGCPEEVLNPQNILNIYNIEAK
IFNAAGYPVVIPERRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-45 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-45 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-45 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-45 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-49 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-49 42
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-50 41
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-46 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-51 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-51 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-51 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TDE0625 NP_971239.1 ABC transporter ATP-binding protein BAC0164 Protein 4e-46 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TDE0625 NP_971239.1 ABC transporter ATP-binding protein VFG0925 Protein 2e-53 45
TDE0625 NP_971239.1 ABC transporter ATP-binding protein VFG1042 Protein 4e-46 41