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Name : clpB (TDE2327) Accession : NP_972927.1 Strain : Treponema denticola ATCC 35405 Genome accession: NC_002967 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2362138 - 2364717 bp Length : 2580 bp Strand : - Note : identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : ATGAATATAGATAAGTATACAGTTAAGGCATCGGAAGCCGTTCAAGAGGCTTCTTCGCTTGCCCAAAGAGACGACCACAG TCAGGTTGAAAGTGAACATCTTTTGTATGTTCTTTTAGAACAAGAGGACGGAATTGTTCCGCCTTTAGTAGAAAAAATCG GAGTAAGTCCCGAAAGTCTTTTGGATGACCTCGATAAAATGCTTGACAGAAAGCCCCGTGTTACGGGACAGTCCGCTCAA ACTTATATTTCGCCCTTACTTGCAAAGGTTTTTGCAAATGCCGAAGGCTATGCAGATAAATTAAAAGACGAATATGTTTC TACCGAACATCTTTTGCTTGCCCTAAGCGAATCTAAAGACGAAACGGGAGAACTCTTGCGCTCACGGGGTATCAATCTAA AAAATCTCCTTTCCGCACTTAAAGAAATCCGCGGAAACAACAGGGTAACGAGCGAAAATCCCGAATCTACATTCAGAAGT TTGGAAAAATTTTGCCGTGACCTTACACAGCTTGCAAAAAACGAAAAGATAGATCCCGTAATCGGGCGGGATGAAGAAAT AAGGCGGGTAATGCAGGTTCTTTCCCGTAGAACAAAAAACAATCCCGTTTTGATCGGAGAACCCGGAGTCGGAAAAACAG CCATAGTCGAAGGCCTTGCAAGGCGTATCGTTTCAGGCGACGTGCCCGACAGCTTAAAGGGAAAAAGACTTTTATCCCTC GACCTCGGAGCCTTGGTCGCAGGAGCAAAATTCCGCGGCGAATTTGAAGAAAGATTAAAGGCCGTAATTTCCGAAGTGCA AAAATCCGAAGGCCGAGTCATCCTCTTTATCGACGAGCTTCACACCCTTGTAGGTGCCGGAGCAAGTGAAGGTTCGATGG ATGCTTCAAACTTATTAAAGCCGGCCCTTGCCCGAGGAGAGCTCAGGGCGATAGGAGCCACTACCCTAAACGAGTACCGA AAATACATCGAAAAAGATGCAGCCCTTGAACGCCGCTTCCAGCAGGTTTACTGTCCCGAACCTACGGTTGAAGACACAAT AGCAATCCTGCGCGGCTTACAGGAAAAATATGAAGTTCATCACGGGGTACGCATAAGGGATGAGGCTCTCATAGCGGCAG CCGTACTTTCCAACCGTTATATCACAAACCGCTTTTTGCCCGACAAGGCGATTGACCTTGTAGATGAGGCTGCAAGCCGT CTTAAAATGGAAATAGAAAGCCAGCCTGTAGAGCTTGATCAGGTTGAGCGCAAAATTCTTCAGTTGAATATCGAAAAGGT TTCTATAGGAAAAGAAAACGATACGGCCTCAAAGGAAAGGCTTTTAAAACTTGAAGAAGAGTTGGCGGAGCTTTCTTCAA AACGGAATGCGATGCAGGCCCAGTGGCAAAACGAAAAAGCCCGCATTAACGAATCCCGCAAATACAAGGAAGAATTGGAA CAGCTCCGTATCGAAGAAACCAAGTACAGCCGAGAGGGAAACTTAAACAAGGCCGCCGAGCTAAAATACGGAAAAATCCC CGAACTCGAAAAGAAGATAGCTGCCGTTACTGCCGAGCTTGAAAAAAAAGCCGGTCAGCAGGGACAGCTTTTACGTGAAG AGGTTTGCGAAGAAGACATAGCCCGAATCGTTTCAATGTGGACAGGTATTCCCGTTGCAAAAATGCTTGCAAGCGAGATG CAAAAATTTTTACAGCTTGAAAAAGTTTTACAAGCCCGCGTCGTCGGACAAGATGAAGCCGTAAGGGTAGTTTCGGATGC TATAAGAAGAAACAAGGCAGGCCTTTCCGATATGAACCGTCCCTTGGGAAGTTTTTTATGTATAGGCCCCACCGGTGTCG GCAAAACCGAATTGGCCAGAACCCTAGCCGATTTTTTGTTCAATGACGAAAAGGCCCTTACCCGAATTGATATGAGCGAG TACATGGAAAAACATTCCGTGAGCCGCCTGATAGGAGCTCCCCCCGGATATGTGGGTTATGATGAGGGAGGGCAGCTTAC CGAGGCCGTAAGACGGAGGCCCTACAGCGTAATCCTCTTTGACGAAATCGAAAAAGCGCATCAGGATGTCTTTAACGTCT TTTTGCAGATTTTGGATGACGGGCGTCTTACCGACGGACAAGGCCGTGTAGTCGATTTTAAGAACACAATTATAATTATG ACCAGCAACATAGGCTCCGAGTATATATTGACCGCAAAGGATATGGGAAGCATAAAAGAAGAAATTAACCAAATTCTCCG CGATAATTTTAGGCCCGAATTTTTAAACCGCATCGACGAAATCCTAACCTTTAACAGGCTTGAAAAAGAACATATACGAA AGATCGTCGATATTCAGCTAAGGTCAGTTGCAGAACGCTTGCAGGCCCGCCGGCTAGGCTTAAAAGTTTCGGATAAGGCG AAGGATTTTCTTGCAGACATAGGTTACGACCCCATGTTCGGTGCCCGCCCCCTAAAGAGGGCTATACAGGCCGAGCTTGA AAACAAACTCGCCCGCGAAGTTCTCGAAGGTAAATTCCCCGAAGGAAGCACAATACTGGTTGACAAGGGAGAAAATAGCC TTATCTTTAAGAAGGGATAA Protein sequence : MNIDKYTVKASEAVQEASSLAQRDDHSQVESEHLLYVLLEQEDGIVPPLVEKIGVSPESLLDDLDKMLDRKPRVTGQSAQ TYISPLLAKVFANAEGYADKLKDEYVSTEHLLLALSESKDETGELLRSRGINLKNLLSALKEIRGNNRVTSENPESTFRS LEKFCRDLTQLAKNEKIDPVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVSGDVPDSLKGKRLLSL DLGALVAGAKFRGEFEERLKAVISEVQKSEGRVILFIDELHTLVGAGASEGSMDASNLLKPALARGELRAIGATTLNEYR KYIEKDAALERRFQQVYCPEPTVEDTIAILRGLQEKYEVHHGVRIRDEALIAAAVLSNRYITNRFLPDKAIDLVDEAASR LKMEIESQPVELDQVERKILQLNIEKVSIGKENDTASKERLLKLEEELAELSSKRNAMQAQWQNEKARINESRKYKEELE QLRIEETKYSREGNLNKAAELKYGKIPELEKKIAAVTAELEKKAGQQGQLLREEVCEEDIARIVSMWTGIPVAKMLASEM QKFLQLEKVLQARVVGQDEAVRVVSDAIRRNKAGLSDMNRPLGSFLCIGPTGVGKTELARTLADFLFNDEKALTRIDMSE YMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHQDVFNVFLQILDDGRLTDGQGRVVDFKNTIIIM TSNIGSEYILTAKDMGSIKEEINQILRDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKA KDFLADIGYDPMFGARPLKRAIQAELENKLAREVLEGKFPEGSTILVDKGENSLIFKKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-103 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_972927.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2076 | Protein | 2e-114 | 42 |
