Gene Information

Name : TDE1844 (TDE1844)
Accession : NP_972448.1
Strain : Treponema denticola ATCC 35405
Genome accession: NC_002967
Putative virulence/resistance : Unknown
Product : DNA integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1873287 - 1874294 bp
Length : 1008 bp
Strand : -
Note : identified by similarity to GP:15822601; match to protein family HMM PF00589; match to protein family HMM PF02899

DNA sequence : 
TTGACTACAGAAATTATTGGAGAAAGGAATAATCATACTGCAACCGATATTCAGAGTATTTTAAATAAGTTGGAAGAAGT
TATTACTGCCAAACATTACAGTAAGCGTACAATGGAGGCTTACAGCTATTGGATAAGCCGCTTTATTCGTGAAAATAAGA
ATAAAAATCTTAAAACTCTTTCCGATACGGAAATAAATGCCTTTGTGAGCCGTCTTGCAGTGAAGGAAAAGGCTGCCGCT
TCAAGCCAAAATCAGGCTCTTGCGGCTCTTTTGTTTCTATATAAAAACATATTAGGCTTAACTATAAAGACTCCTGAAAA
TATAGTCCGTGCTAAAAAGCCTAAAAAGCTGCCTGCCATAATGACCCGTGAGGAAACTGCAAAGATATTCTCTCTTTTGC
CTGAAAACGATTACGGGCTTCTTATCCGTTTGCTTTACGGAACCGGAATGCGGCTTATGGAAGCCTTGCGGTTAAGGATT
CAGGATATTGATTTTGGGAAAAACGAAATTACGGTACACTGCGGAAAGGGTGCGAAAGACCGTAAAACCGTACTTCCTGT
TTCTCTTAAATTTCCGCTTCAAAAACATATGGAAAAAGTCCGCCTTATACATGAGGCAGACTGCAAGGAAGGTTTCGGTT
CGGTGCCGCTTCCGTTTGCTCTTGCAAAAAAATATCCCAATGCCAGTAAGGCTTGGGCATGGCAGTGGGTGTTTCCTCAA
GCACGCCGATGGCGTAACAAAGAAACCGGCGAGCAAGGGCGCCACCATATCGATCCTTCGGTTATTCAGCGTACTCTGCA
TGAAGCTGTTTTAAGGTCAGGTATCCCTAAACCAATCGGCTGTCACACTTTCCGCCACTCATTTGCAACGCACCTGCTTG
AAGCCGGCTACGATATCCGCACCATCCAAGAGCTTCTCGGCCACAGCGATGTTAAAACTACTATGGTTTACACCCATGTC
CTAAACCGCGGCGGACTAGGCATTCAAAGCCCTATCGACAGGATGTGA

Protein sequence : 
MTTEIIGERNNHTATDIQSILNKLEEVITAKHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAA
SSQNQALAALLFLYKNILGLTIKTPENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIRLLYGTGMRLMEALRLRI
QDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHMEKVRLIHEADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQ
ARRWRNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHV
LNRGGLGIQSPIDRM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int1 YP_005160012.1 integrase Not tested Not named Protein 4e-51 46
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 7e-49 46
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 3e-58 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-58 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 3e-58 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-58 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 3e-58 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-58 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 3e-58 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 8e-59 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 3e-58 45
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 3e-58 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 9e-59 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 1e-58 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 3e-58 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 9e-59 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 9e-59 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 3e-58 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-58 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 6e-59 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 9e-59 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TDE1844 NP_972448.1 DNA integrase VFG1028 Protein 6e-59 45