Gene Information

Name : troB (TDE1225)
Accession : NP_971832.1
Strain : Treponema denticola ATCC 35405
Genome accession: NC_002967
Putative virulence/resistance : Virulence
Product : zinc ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1258841 - 1259608 bp
Length : 768 bp
Strand : -
Note : identified by similarity to SP:P96117; match to protein family HMM PF00005

DNA sequence : 
ATGAATACAGGTGCAGAACATTTAAAAGAGAACTTAATTCCGGCTTTTTGTGTTGAAGACCTTACCTTGGCTTACCGCGA
AAAGCCTGTACTATGGGACATAGATGTATGCGTACCCCAAGGAGCAATGGAGGCTGTAGTCGGCCCCAATGGAGCCGGAA
AATCCACCCTTCTTAAAGCAATGATGGGTATTCTTCCTATAGCATCGGGAGAAATAAAAATATTCGGAAAATCATATAAA
TCTCAAAGAAAAAGAATAGCCTACGTACCGCAAAGAAGTTCGGTAGATTGGGATTTTCCGACAACGGTCTTTGATGTTGT
TTTAATGGGTTCATATGGAAATTTAGGATGGATAAAAAGACCGGGGCAAAAGGAAAAAAAAGAAGCTATGTCAGCCTTGG
AAAAGGTAGGAATGCTTGAATTTGCAAAACGTCAGATAAGCGAACTTTCAGGCGGCCAACAGCAAAGAGTTTTTTTGGCA
AGGGCTCTCGTTCAAAATGCGGATCTTTATTTTATGGATGAACCATTTCAAGGAGTCGATGCAGCTACCGAACAGGCTAT
TGTAAAACTTTTAAAAGAACTAAAGGAAAATGGGAAGACTCTTTTGGTAGTCCATCACGATCTTCAAACCGTAAAGGATT
ACTTTGATCGGGTACTCTTATTGAATGTAAGATTAATAGCTGAGGGAAGTATTGAAGAAGTTTTTACCGAAGAAAACTTA
CGCAAAACTTATGGAGGCAGAATAGCCTATAATTCTGAAAAAAAATGA

Protein sequence : 
MNTGAEHLKENLIPAFCVEDLTLAYREKPVLWDIDVCVPQGAMEAVVGPNGAGKSTLLKAMMGILPIASGEIKIFGKSYK
SQRKRIAYVPQRSSVDWDFPTTVFDVVLMGSYGNLGWIKRPGQKEKKEAMSALEKVGMLEFAKRQISELSGGQQQRVFLA
RALVQNADLYFMDEPFQGVDAATEQAIVKLLKELKENGKTLLVVHHDLQTVKDYFDRVLLLNVRLIAEGSIEEVFTEENL
RKTYGGRIAYNSEKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 6e-48 50
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 8e-48 50
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-50 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-50 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-49 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-49 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-50 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB NP_971832.1 zinc ABC transporter ATP-binding protein BAC0400 Protein 5e-89 75
troB NP_971832.1 zinc ABC transporter ATP-binding protein BAC0350 Protein 3e-50 45
troB NP_971832.1 zinc ABC transporter ATP-binding protein BAC0440 Protein 5e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB NP_971832.1 zinc ABC transporter ATP-binding protein VFG0526 Protein 2e-50 45