Gene Information

Name : TDE1178 (TDE1178)
Accession : NP_971786.1
Strain : Treponema denticola ATCC 35405
Genome accession: NC_002967
Putative virulence/resistance : Virulence
Product : iron compound ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1207215 - 1208003 bp
Length : 789 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGACAGCTGTTTCTGCAAAAGACATTTCGTTAAGATACGATAAAAAAGATGTAGTAAAAAGTTTTTCGGCGGATTTTAC
GCAAGGAAAAATTATTTCGATAATAGGGCCTAACGGCTCCGGAAAATCAACCATTTTACGCAGTTTTGCCCGCCTTTTAA
ATACTGCATGCGGCCAAATATCCCTTTTCGATACCGATATCGCAACAGTATCAAAAAAGGAATTTGCAAAACGATTGGCA
ATTTTATTGCAGCACAATATCTCGCCTGAAGATATTACGGTAAAAAATCTGATATACTTCGGCAGATGTCCGCATAAAAA
ATGGTATCAGCAATTTGAAAAAAGAGATGAAGACATTTTACAACAAGTCCTTATCCAAACGGACTTAGTCGACTTTGCCG
AAAAAAAAGTTTGCATGCTTTCAGGCGGCGAAAGACAGCGTGTCTGGCTTGCAATGGCATTGGCACAGCAGCCTCAGGTG
CTACTGCTGGATGAGCCTACCACCTATTTGGATATAGGTTATCAGCTGGAACTTTTGGACCTTGTTTACGATTTAAATCG
AAACACTAATCTTTCGATTATTATGGTATTGCACGATTTAAATCAGGCAGCACAATATAGCGATGAAATTATCGTATTAA
AAGACGGCAAACTTTACAAAAAAGGGACACCGCAAGAAATTTTTACTTCAGAACTTATAAAACAAATTTACGGTATAGAC
TGTAAAGTTATTTATGACGAAGAGGAACATTTTCCGATCGTATTGCCTAAAAGAAAAGGCAAAATCTAA

Protein sequence :
MTAVSAKDISLRYDKKDVVKSFSADFTQGKIISIIGPNGSGKSTILRSFARLLNTACGQISLFDTDIATVSKKEFAKRLA
ILLQHNISPEDITVKNLIYFGRCPHKKWYQQFEKRDEDILQQVLIQTDLVDFAEKKVCMLSGGERQRVWLAMALAQQPQV
LLLDEPTTYLDIGYQLELLDLVYDLNRNTNLSIIMVLHDLNQAAQYSDEIIVLKDGKLYKKGTPQEIFTSELIKQIYGID
CKVIYDEEEHFPIVLPKRKGKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-51 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-51 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-51 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 9e-51 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-46 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-46 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TDE1178 NP_971786.1 iron compound ABC transporter ATP-binding protein VFG0925 Protein 9e-52 42