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Name : SAR1562 (SAR1562) Accession : YP_040964.1 Strain : Staphylococcus aureus MRSA252 Genome accession: NC_002952 Putative virulence/resistance : Unknown Product : phage integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1636208 - 1637413 bp Length : 1206 bp Strand : + Note : Similar to bacteriophage phi PVL and temperate phage phiSLT integrase TR:O80068 (EMBL:AB009866) (401 aa) fasta scores: E(): 7.8e-138, 99.751% id in 401 aa, and to the C-terminal region of bacteriophage L54a excisionase Xis SW:VINT_BPL54 (P20709) (354 aa) DNA sequence : ATGTGGTTTGAAAAATTTAAAAATAAGAACAATGAAACGAAGTATAGATACTACGAGAAATACAAAGATCCGTATACAGA TAAATGGAAACGTGTAAGTGTTGTCTTGAATAAGAATACAAAACAATCTCAAAAAGAAGCAATGTTTCGTTTAGAAGAAA AAATAAAAGAAAAACTGAACAACAAGTCGTCAAGCGAATTAAAAACTTTGACTTTTCACGCGCTATTAGATGAATGGCTT GAATATCATATAAAAACATCAGGTTCAAAGTTGACTACTCTTAATAATATAAAAATAAGAATTAGAAACATTAAACGATA CAGCTCTGAGAACTTGCTTTTAAACAAACTAGATACAAAATATATGCAGATATTTATTAATAAATTATCAGATATCTATT CTCAAAATCAAGTAACCCGTCAACTCGGAGATATGAAAGGAGCTATTAAATATGCAGTTAAATTTTACAATTATCCAAAT GAATATTTGTTAACTAATGTCAAAATTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTA CAACTATTTAGAAATGAACCAAGTCCTACAGATACGTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCA TTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGAT ATAGATTTATTAAACAAAACTATTAATATAACAGGTACAATTCACCGCATTAAATACGAGGAAGGATTCGGATACAAAGA CACTACAAAGACTATAAGTTCAAAAAGAAGTATCAGCATCAATTCTAGAACCGTAGAAATTTTTAAAAAGATAATACTGG AAAACAAAATGTTGAAAAGATGGAATTCGAGCTATGTTGACAGAGGGTTCATATTCACAACAAAAAAAGGGAATCCTTTA TGTAATAATCAAATCGCCGGTGTGCTTAAGAAAACTACAAAAGCTTTAAATATGAATAAGAAAGTTACCACGCACACATT TAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGTAGATG AAAAAACAACCATTCGCATATATACTCATGTAACTGAAAAAATGGATAGAGAACTAACTCAAAAACTCGAAAACATTCCA AGTTAG Protein sequence : MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWL EYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPN EYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPL CNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIP S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | NP_646259.1 | integrase | Not tested | ¥ÕSa2 | Protein | 2e-155 | 100 |
| SAUSA300_1438 | YP_494135.1 | phiSLT ORF401-like protein, integrase | Not tested | ¥ÕSa2 | Protein | 1e-155 | 99 |
| SAOV_0274 | YP_005735791.1 | putative prophage integrase | Not tested | ¥ÕSa1 | Protein | 7e-119 | 75 |
| int | AAC28969.1 | integrase | Not tested | SaPI1 | Protein | 1e-62 | 48 |
| int | AAL04148.1 | integrase-like protein | Not tested | SaPI3 | Protein | 6e-62 | 47 |
| SACOL0885 | YP_185756.1 | pathogenicity island protein, integrase | Not tested | vSa1 | Protein | 8e-62 | 47 |
| int | YP_493499.1 | integrase | Not tested | SaPI5 | Protein | 9e-62 | 47 |
| SAAV_0787 | YP_003281710.1 | pathogenicity island protein, integrase | Virulence | SaPIAv | Protein | 3e-61 | 46 |
