Gene Information

Name : cap1C (SACOL2685)
Accession : YP_187472.1
Strain : Staphylococcus aureus COL
Genome accession: NC_002951
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein Cap1C
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG4464
EC number : -
Position : 2759612 - 2760379 bp
Length : 768 bp
Strand : -
Note : identified by match to protein family HMM PF02811

DNA sequence : 
ATGATTGATATTCATAACCATATATTAGTTGATATAGATGATGGTCCTAAAACAATTGAAAAGAGTATTGCACTATTAAA
GCAAGCTAAGGATGAAGGTGTAACAAGTATTGTAGCGACACCTCATCATTTGCATCCGAGATATGATAATACATTTCAAC
AAGTGCTTGTGAAATTGGCGGAGTTAAGAACGCATCCAGAAGTTCAAGCATTGGATATTAAATTATTTCCCGGGCAAGAA
ATTAGAATTACAGATTCGATTCTGAAAGGCTTAGATAATGGTAGTATTCAAGGTATTAATCGTTCGAAATATTTATTAAT
TGAATTTCCAACGGGCGAAGTACCACATTATACAAAACAATTGTTTTTTGAAATACAATCGAGAGGTTACATACCAATCA
TTGCACATCCTGAAAGAAATAGAAGTATCGCCAAAAATCCGGAAATATTATATGAATTGGTTGCAAATGGGGCACTGAGT
CAATTAACATCGAGTTCTTTAGTTGGTGGATTTGGTAAAAACATTCAAAAGTTATCATTACAATTTATAGAATGTAATTT
GGCTCATTTTGTAGCTTCAGATGCACATTCATGTGACCAAAGACCATTTTTGATGCAAGAATTATTTCACAATCATAAAT
TGAAGAAATATTCGAATGATATTGAAGCATTACTTCGAAATGCCAGTTCAGTAATCAATGATAATTTTGTTTATTTAGAC
AGACCGACTAAGCCAGGAAAAGTGAAGTCGTTTTTGAAATGGTTTTAA

Protein sequence : 
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQE
IRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALS
QLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
RPTKPGKVKSFLKWF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1C AAA64642.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-73 57
SSP0062 YP_300152.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-68 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cap1C YP_187472.1 capsular polysaccharide biosynthesis protein Cap1C VFG1299 Protein 7e-65 53