Gene Information

Name : cap5M (SACOL0148)
Accession : YP_185048.1
Strain : Staphylococcus aureus COL
Genome accession: NC_002951
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis galactosyltransferase Cap5M
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 165991 - 166548 bp
Length : 558 bp
Strand : +
Note : identified by match to protein family HMM PF02397

DNA sequence : 
ATGAAGCGATTATTCGATGTAGTGAGTTCAATATATGGTTTAGTAGTTTTAAGTCCGATTCTGTTAATTACAGCATTACT
AATTAAAATGGAATCACCTGGACCAGCCATTTTCAAACAAAAAAGACCGACGATTAATAATGAATTGTTTAATATTTATA
AGTTTAGATCAATGAAAATAGACACACCTAATGTTGCAACTGATTTAATGGATTCAACATCGTATATAACAAAGACAGGG
AAGGTCATTCGTAAGACCTCTATTGATGAATTGCCACAATTATTGAATGTTTTAAAAGGAGAAATGTCAATTGTAGGTCC
TAGACCAGCGCTTTATAATCAATACGAATTAATCGAAAAACGTACAAAAGCGAACGTGCATACGATTAGACCAGGTGTGA
CAGGACTAGCTCAAGTGATGGGGAGAGATGATATCACTGATGATCAAAAAGTAGCGTATGATCATTATTACTTAACACAT
CAATCTATGATGCTTGATATGTATATCATATATAAAACAATTAAAAATATCGTTACTTCAGAAGGTGTGCATCACTAA

Protein sequence : 
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTG
KVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTH
QSMMLDMYIIYKTIKNIVTSEGVHH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 4e-63 69
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 9e-63 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cap5M YP_185048.1 capsular polysaccharide biosynthesis galactosyltransferase Cap5M VFG1309 Protein 3e-85 99
cap5M YP_185048.1 capsular polysaccharide biosynthesis galactosyltransferase Cap5M VFG1369 Protein 3e-32 49
cap5M YP_185048.1 capsular polysaccharide biosynthesis galactosyltransferase Cap5M VFG0032 Protein 2e-14 41