|
Name : lysS (PG1370) Accession : NP_905535.1 Strain : Porphyromonas gingivalis W83 Genome accession: NC_002950 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1450583 - 1452319 bp Length : 1737 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAACATACTCGAACTTTCGGAACAAGAAGTCGTACGCCGTAACAGCTTAGAGCAACTGCGTAATTTGGGGATCGATCC ATATCCTGCAGCGGAATATACCGTCAATGCCTATTCCGCCGAGATCAAAAGGAATTTCAATGGCGATGAGAATGTCGCCA AACGTCAAGTAAGCATTGCCGGACGTATTATGAGCCGCCGTATCATGGGGAAAGCTACATTCATGGAGCTGCAAGATGCT GAGGGGCGTATCCAGATCTATATTACTCGGGACGATATTTGTCCGGGTGAGGATAAGGAGTTCTACAATACGGTGGTCAA GAAGTGTACGGATATAGGTGATTTTATCGGAGTGAAAGGGTACGTATTCCGCACTCAGATGGGAGAAATATCGGTGCATG TGCAGGAGATGACTTTCTTGTCGAAAGCTATCCGCCCCCTTCCTGTGGTAAAAGAAAAAGATGGGGAGGTCTTCGATGGC TTCACGGATCCGGAGCAGCGTTATCGTCAGCGATACGTGGATCTGGTCGTCAATAGTCATGTCAAAGACATTTTCCTCAA GCGTACGATGGTATTCAATTCGATGCGCAGTTTCTTCAATGAGTGCGGATACATCGAAGTGGATACACCTGTACTCCAAT CGATCCCGGGAGGTGCAGCTGCGCGTCCTTTTATCACGCATCATAACGCTCTGGACATTCCGCTCTATCTGAGAATCGCT AACGAATTGTATCTGAAGCGTCTGATCGTGGGCGGTTTCGATGGTGTGTATGAATTCAGCCGCAATTTCCGAAATGAGGG GATGGACCGCACGCATAATCCTGAGTTCACGGCCATGGAGATCTATGTGGCGTATAAGGATTACAACTGGATGATGAACT TTACGGAGCAGATGCTCGAACGCATCTGTATGGATGTGCTGGGTACTACTCAGATGAAGGTGGGCGGGAAATTGATCGAC TTCAAGGCCCCCTACAAGCGAGTGACCATGATCGAAGCCATCCATGAGCATACGGGTATCGACATCAGCGGAATGAACGA GGCCGAGCTGCGTCAGGTATGCGACAAGCTGGGCGTAGAGCACAATGAAACGATGGGCAAAGGCAAGCTCATCGATGAGA TCTTCGGCGAGAAGTGCGAGAAGAACTATATCCAGCCTACTTTCATCACAGACTATCCGAAAGAAATGTCGCCTCTGACG AAGGAGCACCGCACCAATCCGGAGCTGACAGAGCGATTCGAGCTGATGGTCAATGGCAAGGAGTTGGCCAACGCCTACTC GGAGCTGAACGACCCGATTGATCAGAGAGAACGTTTCGAAGAACAACTCAAGCTGTCCGAGAAAGGCGATGACGAAGCCA TGTACATCGACAACGACTTCATCCGTGCCCTTGAATACGGTATGCCGCCGACCAGCGGTATGGGTATCGGTATGGACCGT TTGGTCATGCTATTGACAGGGCAGGAGAGTATTCAGGAGGTGCTCCTCTTCCCACAGATGAAGCCCGAGAAGGTGGCTCC ACGAGATACGAAAGAGAAGTTCGCCGTTTGTGGCGTTCCCGAAGAGTGGGTACCTGTACTGCATAAGGCCGGCTATCTTA CCGTACAGTCGATGCGAGAGGATAAACCGGGCAAGGTGATGCAGCAGCTGATGGACATCAATAAGAAATATAAGTTGGGG CTTGCCGGTTTGAATCTGGAAACCGTTTCGGCTTGGCAGGAAGCCCCATATGAGTAA Protein sequence : MNILELSEQEVVRRNSLEQLRNLGIDPYPAAEYTVNAYSAEIKRNFNGDENVAKRQVSIAGRIMSRRIMGKATFMELQDA EGRIQIYITRDDICPGEDKEFYNTVVKKCTDIGDFIGVKGYVFRTQMGEISVHVQEMTFLSKAIRPLPVVKEKDGEVFDG FTDPEQRYRQRYVDLVVNSHVKDIFLKRTMVFNSMRSFFNECGYIEVDTPVLQSIPGGAAARPFITHHNALDIPLYLRIA NELYLKRLIVGGFDGVYEFSRNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMNFTEQMLERICMDVLGTTQMKVGGKLID FKAPYKRVTMIEAIHEHTGIDISGMNEAELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLT KEHRTNPELTERFELMVNGKELANAYSELNDPIDQRERFEEQLKLSEKGDDEAMYIDNDFIRALEYGMPPTSGMGIGMDR LVMLLTGQESIQEVLLFPQMKPEKVAPRDTKEKFAVCGVPEEWVPVLHKAGYLTVQSMREDKPGKVMQQLMDINKKYKLG LAGLNLETVSAWQEAPYE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-106 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_905535.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 9e-107 | 46 |
