Gene Information

Name : colR (PP_0901)
Accession : NP_743062.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1041516 - 1042199 bp
Length : 684 bp
Strand : +
Note : similar to GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, PID:1805513, GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, and PID:1805513; id

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAAGGCTACACCGT
CGACTGCGCCCAGGATGGCCTGTCCGGGCTGCATCTGGCCGCCACCGAACACTACGACCTGATCGTACTCGACATCATGC
TGCCAGGCATCGATGGCTACACCCTGTGCAAGCGCCTGCGCGAAGATGCCCGCCGTGACACGCCGGTGATCATGCTCACT
GCCCGTGACCAGCTGGACGACCGCCTGCAGGGCTTCCGCTCGGGGGCTGACGACTACCTGCTCAAGCCATTTGCCCTGTC
GGAGCTGGCGGCGCGCATCGAAGCGGTGCTGCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGA
GCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCG
GTACTGATGCAGAAAAGCCCGCACGTACTGCGCCGCGAGGTGCTGGAAGAAGCCTTGTGGGGCGACGACTGCCCTGATAG
CGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR NP_743062.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-35 43
colR NP_743062.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR NP_743062.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-33 42
colR NP_743062.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-31 41