Gene Information

Name : copR (PP_5383)
Accession : NP_747484.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 6134976 - 6135653 bp
Length : 678 bp
Strand : +
Note : similar to GP:6045171, GB:D11428, GB:M94048, GB:L03203, GB:X65968, GB:S61788, SP:Q01453, PID:182985, PID:190131, PID:220010, and PID:31653; identified by sequence similarity

DNA sequence : 
ATGAAACTACTCGTAGCTGAGGATGAACCGAAAACTGGTGCTTATTTACAACAGGGCCTTGCAGAGGCGGGATTCACTGT
TGACCGGGTCCTCACGGGTACCGATGCCCTTCAACATGCACTCAGCGAAAGCTATGACCTGCTGATACTCGACGTGATGA
TGCCGGGGCTAGAAGGATGGGAAGTCTTGCGAATGGTCCGCGCAGCCGGCAAAGACGTCCCGGTATTGTTTCTGACTGCC
AGGGATGGGGTAGATGATCGAGTGAAAGGCCTTGAGCTGGGAGCCGATGACTACCTGATCAAGCCCTTCGCTTTCTCAGA
GCTACTGGCTCGGGTGCGGACCTTGCTTCGCCGAGGCACCAGCACAGCAGCCCAGACCACCATGAAAATGGCGGATCTTG
AGGTAGATCTCCTCAAGCGAAGAGCTACTCGAAGTGGCAAGCGAATCGACCTGACCGCTAAAGAGTTTTCACTTCTGGAG
CTTTTGATGCGCCGGCGCGGTGAGGTGCTCCCCAAATCTCTGATTGCGTCCCAGGTGTGGGACATGAACTTCGACAGCGA
CACCAATGTGATCGAGGTTGCGATACGACGGCTACGGGCAAAGATCGATGATGACTTTGCCCCTAAGCTGATTCACACAG
CTCGGGGAATGGGCTACATGATGGATGCACCGGAGTGA

Protein sequence : 
MKLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGWEVLRMVRAAGKDVPVLFLTA
RDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGTSTAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLE
LLMRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMDAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-57 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-56 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0638 Protein 2e-83 84
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0083 Protein 5e-89 82
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0197 Protein 8e-69 64
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0308 Protein 5e-68 63
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0111 Protein 1e-73 62
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0125 Protein 1e-67 60
copR NP_747484.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-67 58
copR NP_747484.1 two component heavy metal response transcriptional regulator NC_002516.2.879194.p Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR NP_747484.1 two component heavy metal response transcriptional regulator VFG0596 Protein 8e-58 57
copR NP_747484.1 two component heavy metal response transcriptional regulator VFG1390 Protein 3e-43 46
copR NP_747484.1 two component heavy metal response transcriptional regulator VFG1389 Protein 5e-40 45
copR NP_747484.1 two component heavy metal response transcriptional regulator VFG1386 Protein 3e-37 41