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Name : PP_5190 (PP_5190) Accession : NP_747291.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5919406 - 5921079 bp Length : 1674 bp Strand : + Note : identified by match to PFAM protein family HMM PF00437 DNA sequence : ATGCACACCCCCGACAACCCCGCACTCGACCTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAG CGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGG AAAGCCGCCAGCACCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTAC CTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT CCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAGCCTTTCCAGGATGACTGGCAGGCCGACCTGG CCCGCAGCCTCGGCCGGTCGATCCGTCGCGTACTGGCCAGCCCGCAGCAGATCCGTCAGTCAGCGCAGTCGTTCCACCGC CTGGCCCAGTCGGTAAAAGGCGCGCAATACCAGCAGTCGGCGAGCCTGGGGGAACTTGAGCAATTGCTTGAGCTGGGCAA ACGCCAGGCCGAGGCCAGCGCAGACGACGCGCATATCGTGCATATCGTCGACTGGCTGTTGCAGTACGCCATCGAGCAAC GCGCCAGCGATATCCACCTGGAACCACGCCGCGAACAGGGCCAGCTGCGCTACCGTATCGATGGCCTGCTGCACACCGTC TACGCCTTCCCCGCCGGGGTCACCCTGGCCCTCGTCAGCCGCCTGAAACACCTGGGCCGCATGGACGTTGCAGAGAAGCG CCGGCCGCAGGACGGCCGGCTGCAAAGCCGCCTACCCGGTGGTGGCGAAGTGGAGCTGCGGCTTTCGACCCTGCCCACCC CATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGC CAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAA GACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGC GCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTG CGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGAC CGGGCACCTGGTGCTATCGACCCTGCATACCAACGACGCCTGCGCAGCAATCACCCGTTTGCAAGAGCTGGGTGTGGCCG ACTACCTGATCAAGGCGACGCTTATCGGGGTGATGGCCCAGCGCCTGGTGCGAACCGTCTGCACCGACTGCCAGACAGGT TCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGA CACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCCAGGCGCTGGCCGATGGCCTGGTTGACC TGCGCCGTTGCGGCGAGGCCAAGGTGGCCGCTGGGCAGACCCGTGCCGAGGAAGTGCTGCGCGTCTGCAACTGA Protein sequence : MHTPDNPALDLKRVLQALLADQHLHASDTLQVLEHAAAHPASHPLEHIAACSLESRQHPGQPLDLEHLCQWLADKVGQPY LRIDPMQLDLPQVTSLISPAFAQRHGILIVAADASSVTVASAQPFQDDWQADLARSLGRSIRRVLASPQQIRQSAQSFHR LAQSVKGAQYQQSASLGELEQLLELGKRQAEASADDAHIVHIVDWLLQYAIEQRASDIHLEPRREQGQLRYRIDGLLHTV YAFPAGVTLALVSRLKHLGRMDVAEKRRPQDGRLQSRLPGGGEVELRLSTLPTPFGEKLVLRLFDPHQLQEGFDRLGLHG QQLAQWQRLLRQRQGIILVTGPTGSGKTSTLYTSLKLLATPQVNLCTIEDPIERLEPAFNQLQVQPALDLGFANAVRAML RQDPDIIMIGEIRDRETALVAVQAALTGHLVLSTLHTNDACAAITRLQELGVADYLIKATLIGVMAQRLVRTVCTDCQTG SSATCRACRGTGFQGRTGLFELLEPSDTLRALIGPDADLTCLRRQALADGLVDLRRCGEAKVAAGQTRAEEVLRVCN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-58 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-58 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PP_5190 | NP_747291.1 | type II secretion system protein E | VFG2048 | Protein | 5e-58 | 46 |
| PP_5190 | NP_747291.1 | type II secretion system protein E | VFG0233 | Protein | 1e-50 | 41 |
