Gene Information

Name : PP_5140 (PP_5140)
Accession : NP_747241.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Resistance
Product : MerR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 5866225 - 5866668 bp
Length : 444 bp
Strand : +
Note : identified by match to PFAM protein family HMM PF00376

DNA sequence : 
ATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCC
AGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCC
GCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTC
AATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGA
GCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTAC
CGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGA

Protein sequence : 
MKIGELAKATDCAVETIRYYERENLLPEPARSEGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPDDACGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGSECAILQQLETNGAVSVPDTEHSHVGRSHGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-36 56
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 2e-32 49
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 3e-32 49
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-32 49
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-32 49
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 2e-32 49
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 2e-32 49
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 2e-32 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_5140 NP_747241.1 MerR family transcriptional regulator BAC0058 Protein 3e-64 97
PP_5140 NP_747241.1 MerR family transcriptional regulator BAC0301 Protein 1e-34 58