Gene Information

Name : PP_4443 (PP_4443)
Accession : NP_746554.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Unknown
Product : ISPpu14, transposase Orf3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 5036907 - 5038442 bp
Length : 1536 bp
Strand : +
Note : similar to GP:3414883, and GP:3414883; identified by sequence similarity

DNA sequence :
ATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAGTTGCAGTC
CCAGGTCGAGGCGATGAGCCGGAAGATCCAGAACGACGAAATCCTCATCGAACAATTCAAGTTCGAAATCGCCCTGCTCA
AACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAGGCAGCTTGCTGGATGACCTGCTCGATACAGAT
CTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAAGCCGAGCCACGGCAATCGCCGAAACGCGC
CCCATTGCCGCCGCAGTTTCCACGCGCGGTGATTCGTCACGAACCCGAAAACACCCAGTGCGCCTGTGGCTGCCAACTCC
AACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCGGGGGTGTTTACCGTCGAGCAACATGTGCGTGGCAAA
TGGGCCTGCCGTCAGTGCGAAACCCTGATCCAGGCGCCGGTGCCAGCCCAGGTTATTGATAAAGGTATCCCGACCGCAGG
CTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGATCACTTACCGCTGTACCGGCAGGAGAAAATCCTTGGCCGCGCCG
GGCTGGCAATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGCGTGCGACTCCAGCCGCTGGTCGATGCTCTG
CGTGAAGCTGTGCTGAAGCAGGGCGTGATTCACGCTGACGAAACGCCGGTGCAGATGCTTGCGCCAGGCGAGAAGAAAAC
TCACCGGGCTTATGTTTGGGCCTATAGCACGACGCCGTTTTCGGCGCTTAATGCGGTGGTTTACGACTTCAGCCCAAGCC
GTGCTGGCGAACATGCGCGCAACTTCCTGGGCGACTGGAGCGGCAAGTTGGTCTGCGATGACTTCGCTGGCTACAAAGCC
GGGTTTGAGCAAGGCATCACTGAAATCGGCTGTATGGCCCACGCCCGTCGCAAGTTCTTTGATCTGCACGTAGCGAACAA
AAGTCAGCTGGCCGAACAAGCGCTGCACTCGATCAGCGGCCTGTACGAGGTTGAACGCCAGGCGCGGGAAATGAGTGATG
AAGATCGTTGGCGAATACGGCAGGAACTGGCGGTACCGATCAGCAAAACACTGCATGAGTGGATGTTGGCCCAGCGTGAC
CTGGTGCCCAACGGATCAGCCACAGCCAAAGCCCTCGACTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGA
CGATGGATCTGTGCCCATCGACAACAATCAGGTCGAGAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGT
TTGCCGGGTCGCTGCGCAGTGGTAAACGAGCGGCTGCGATCATGAGTTTGATCCAGTCGGCGCGCATGAACGGGCATGAT
CCGTATGCCTATCTCAAAGATGTGCTGACGCGGTTGCCGACACAGCGGGCCAGTGAGATCGGGCAACTGCTGCCGCATCA
GTGGGTATCGGCCTGA

Protein sequence :
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEIALLKRHKFAKRSEQISPAQGSLLDDLLDTD
LEAIEAELKQLLPASSQAEPRQSPKRAPLPPQFPRAVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGK
WACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADHLPLYRQEKILGRAGLAIARSTLAQWVGQTGVRLQPLVDAL
REAVLKQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHARNFLGDWSGKLVCDDFAGYKA
GFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQAREMSDEDRWRIRQELAVPISKTLHEWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGSVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARMNGHD
PYAYLKDVLTRLPTQRASEIGQLLPHQWVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 0.0 95
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 2e-135 55
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-63 43
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 2e-65 42
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 6e-71 42
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 3e-68 41
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_4443 NP_746554.1 ISPpu14, transposase Orf3 VFG1700 Protein 4e-64 43
PP_4443 NP_746554.1 ISPpu14, transposase Orf3 VFG1513 Protein 1e-65 42