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Name : PP_4420 (PP_4420) Accession : NP_746533.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : transposase, OrfB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 5014541 - 5015350 bp Length : 810 bp Strand : + Note : identified by match to PFAM protein family HMM PF00665 DNA sequence : GTGTTCGAAGTCACTCGCTCAAGTTACTACGCCCATCGTCATAGAAGACGAACTCCGGACGTCGAGCGACTGCGATTGCG CAGTCGAGTGAATGAGTTGTTCGCGCGAGGGCGAAGTGCGCCCGGCAGCCGTAGCGTCAAGGCGATGATGCAAGAGGAAG GTGAGCAAATCGGGCGGTTCAAGGTGCGCAGCCTGATGCGTGAGCTAGCGTTAGTCAGCAAGCAGCCAGGGGCCTATGCG TACAAAAAGGCCACAGTGGAGCGGCCAGATATTCCGAATATTTTGAACCGGGCGTTTGATGTCGAAGCGCCAAATCAGGT CTGGTGTGGCGACATCACTTACATTTGGGCGCAGGGCAAATGGCACTACTTGGCAGTTGTCCTGGATCTTTATGCACGCA GAGTGGTGGGCTGGGCCCTATCAGAGAAGCCGGACGCAGACCTCGTGGTCAAGGCGCTGGACGTGGCTTACGAACAACGT GGCAAACCTCAAGGGCTACTGTTCCACTCAGACCAGGGGTCGCAATATGGCAGCCGTCAGTTCCGCCAGAGACTGTGGCG CTACCGCATGCGCCAGAGTATGAGCCGCCGAGGTAACTGCTGGGATAATGCGCCGATGGAGCGAGTATTTCGTAGCTTGA AATCGGAGTGGATACCGACCACTGGATACCTGACTGGGCAGCAAGCTCAACGAGACATCAGCCAATACCTGATGAGGCAC TACAACTGGATCCGCCCGCATCAATTCAACAATGGGCTGGCTCCGGCAAAAGCTGAAGAAAAACTCAAAACTGTGTCCGG AATGAGTTGA Protein sequence : MFEVTRSSYYAHRHRRRTPDVERLRLRSRVNELFARGRSAPGSRSVKAMMQEEGEQIGRFKVRSLMRELALVSKQPGAYA YKKATVERPDIPNILNRAFDVEAPNQVWCGDITYIWAQGKWHYLAVVLDLYARRVVGWALSEKPDADLVVKALDVAYEQR GKPQGLLFHSDQGSQYGSRQFRQRLWRYRMRQSMSRRGNCWDNAPMERVFRSLKSEWIPTTGYLTGQQAQRDISQYLMRH YNWIRPHQFNNGLAPAKAEEKLKTVSGMS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| RS04 | AAP82949.1 | putative transposase | Not tested | PAPI-2 | Protein | 6e-91 | 75 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 3e-59 | 58 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 3e-59 | 58 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 6e-60 | 53 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 8e-60 | 53 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 3e-61 | 53 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 3e-61 | 53 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 1e-61 | 52 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 1e-61 | 52 |
| ECO111_3779 | YP_003236114.1 | putative IS602 transposase OrfB | Not tested | LEE | Protein | 1e-63 | 51 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 2e-65 | 51 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 2e-65 | 51 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 2e-65 | 51 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 2e-65 | 51 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 3e-65 | 51 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 2e-65 | 51 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 3e-65 | 51 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 2e-65 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PP_4420 | NP_746533.1 | transposase, OrfB | VFG1484 | Protein | 2e-59 | 58 |
| PP_4420 | NP_746533.1 | transposase, OrfB | VFG0785 | Protein | 6e-62 | 52 |
| PP_4420 | NP_746533.1 | transposase, OrfB | VFG1122 | Protein | 1e-65 | 51 |
