Gene Information

Name : gacA (PP_4099)
Accession : NP_746219.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator GacA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 4635113 - 4635751 bp
Length : 639 bp
Strand : -
Note : similar to GP:3142729, GB:X51405, SP:P16870, and PID:29667; identified by sequence similarity

DNA sequence : 
TTGATTAGGGTCTTAGTGGTCGATGATCACGATCTGGTACGAACCGGTATTACACGGATGTTGGCCGACATCGACGGCCT
GCAGGTGGTGGGTGAGGGAGATTCCGGCGAGTCGGCACTGAAACTGGCCCGGGAGCTGAAACCGGACGTTGTGCTGATGG
ATGTGAAAATGCCCGGCATCGGCGGCCTGGAGGCCACCCGCAAACTGCTGCGCAGCCACCCTGACATCAAGGTAGTGGCG
GTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGG
CCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGG
CGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGATCGTC
GGCTGCCAGAAAGTGCAGATCATCTCCGACAAGTTGTGCCTCTCGCCCAAGACCGTCAATACTTACCGTTATCGGATCTT
TGAAAAACTCTCGGTCACCAGCGACGTCGAACTGACCTTGCTGGCCGTTCGCCACGGTATGGTTGACGCAAGCCTGTAA

Protein sequence : 
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGEGDSGESALKLARELKPDVVLMDVKMPGIGGLEATRKLLRSHPDIKVVA
VTVCEEDPFPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLALKPFQPQGSPFDALSEREIQIALMIV
GCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMVDASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-50 55
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-50 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA NP_746219.1 DNA-binding response regulator GacA VFG1889 Protein 1e-49 54