Gene Information

Name : PP_3981 (PP_3981)
Accession : NP_746111.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Unknown
Product : ISPpu14, transposase Orf3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4487111 - 4488646 bp
Length : 1536 bp
Strand : +
Note : similar to GP:3414883, and GP:6009427; identified by sequence similarity

DNA sequence :
ATGACTTTCTCGCCCAATCTCGACCAGATGACCCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAGTTGCAGTC
TCAGGTCGAGGCGATGAGCAAAAAGATCCAGAACGATGAAATCCTCATCGAGCAGTTCAAGTTCGAAATCGCCCTGCTCA
AACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGAC
CTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGGCAATCGCCCAAACGTGC
ACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTC
AACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAA
TGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGG
CTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCG
GGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGGTCGGACAAACCGGTGTGCGACTCCAGCCACTGGTCGATGCACTA
CGTGAAGCGGTGCTGAACCAGGGCGTGATTCACGCTGATGAAACCCCGGTGCAAATGCTTGCGCCGGGCGAGAAGAAAAC
CCACCGGGCCTATGTCTGGGCCTACAGCACGACGCCGTTTTCGGCGCTCAACGCGGTGGTTTATGACTTCAGCCCAAGCC
GTGCTGGCGAACATGCGCGCAACTTCCTGGGCGACTGGAACGGTAAGTTGGTCTGCGATGACTTCGCTGGCTACAAAGCC
GGTTTTGAGCAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGTCGCAAGTTCTTTGATCTGCACGTAGCGAATAA
AAGCCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGTTTGTACGAGGTCGAACGCCAAGCGCGGGACATGAGTGATG
AAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGAC
TTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGA
CGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCTGGGCACTCGGGCGCTCGAACTGGCTGT
TTGCCGGGTCGCTACGCAGTGGTAAACGGGCCGCTGCAATCATGAGCCTGATCCAGTCGGCGCGTATGAATGGGCATGAT
CCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCA
GTGGGTGCCTGCCTAA

Protein sequence :
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSKKIQNDEILIEQFKFEIALLKRHKFAKRSEQISPAQGSLLDDLLDTD
LEAIEAELKQLLPASSQAEPRQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGVFTVEHHVRGK
WACRQCETLIQAPVPAQVIDKGVPTAGLLAHVMVAKFADHLPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDAL
REAVLNQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHARNFLGDWNGKLVCDDFAGYKA
GFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQARDMSDEDRWRIRQEMAVPILKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARMNGHD
PYAYLKDVLTRLPTQRASEIGQLLPHQWVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 0.0 96
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 6e-137 55
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-65 42
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 2e-66 42
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-72 42
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 2e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_3981 NP_746111.1 ISPpu14, transposase Orf3 VFG1700 Protein 7e-66 42
PP_3981 NP_746111.1 ISPpu14, transposase Orf3 VFG1513 Protein 1e-66 42