Gene Information

Name : PP_3964 (PP_3964)
Accession : NP_746094.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Unknown
Product : ISPpu14, transposase Orf3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4473999 - 4475534 bp
Length : 1536 bp
Strand : -
Note : similar to GP:3414883, and GP:6009427; identified by sequence similarity

DNA sequence :
ATGACTTTCTCGCCCAACCTCGACCAGATGACCCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAATTGCAATC
CCAGGTCGAGGCGATGAGCAGGAAGATTCAGAACGATGAAATCCTCATCGAACAGTTCAAGTTCGAAATCGCCCTGCTCA
AACGGCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAAGCAACTTGCTGGATGACCTGCTCGACACAGAC
CTTGAAGCTATCGAGGCCGAGCTAAAACAGCTTCTCCCAGATGCGCCACAGGCCGAACCACGACAATCCCCGAAACGTGC
GCCTTTGCCGCCGCAGTTTCCACGCACGGTGATTCGTCACGAACCCGAAAACACCCAGTGCGTCTGTGGCTGCCAACTTC
AACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGCGGGGCAAA
TGGGCCTGTCGCCAGTGCGAAACCCTGATCCAGGCCCCGGTGCCAGCCCAGGTTATCGACAAAGGTATCCCGACCACAGG
TTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGTGCCG
GGCTGGCAATTGCTCGCTCGACCCTGGCGCAGTGGGTCGGACAAACCGGCGTGCGGCTTCAGCCACTGGTCGATGCACTG
CGTGAAGCCGTGCTGAATCAGGGCGTGATCCACGCTGATGAGACACCGGTGCAAATGCTTGCGCCAGGCGAGAAGAAAAC
CCACCGGGCCTATGTCTGGGCGTACAGCACGACGCCGTTTTCAGGGCTCAAAGCGGTGGTTTACGACTTCAGCCCAAGCC
GTGCTGGCGAACATGCGCGCAACTTCCTGGGTGACTGGAACGGCAAGTTGGTCTGCGACGACTTCGCTGGCTACAAAGCC
GGTTTCGAACAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGGCGCAAGTTCTTTGATTTGCACGTGGCGAACAA
AAGTCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGTCAGGCGCGGGACATGAGTGATG
AAGAGCGCTGGCGAATACGACAAGAATTGGCGGTGCCGATCCTCAAAAAACTGCATGACTGGATGTTGGCTCAGCGAGAC
CTGGTGCCCAATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGA
TGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTAT
TTGCGGGATCCCTGCGCAGCGGTAAGCGGGCTGCGGCAATCATGAGTTTGATCCAGTCGGCGCGCATGAATGGGCATGAT
CCGTATGCCTATCTCAAAGATGTGCTGACGCGGCTGCCGACCCAACGGGCCAGTGAGATCGGACAGTTGCTGCCGCATCA
GTGGGTGCCGGCCTGA

Protein sequence :
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEIALLKRHKFAKRSEQISPAQSNLLDDLLDTD
LEAIEAELKQLLPDAPQAEPRQSPKRAPLPPQFPRTVIRHEPENTQCVCGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGK
WACRQCETLIQAPVPAQVIDKGIPTTGLLAHVMVAKFADHLPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDAL
REAVLNQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSGLKAVVYDFSPSRAGEHARNFLGDWNGKLVCDDFAGYKA
GFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQARDMSDEERWRIRQELAVPILKKLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARMNGHD
PYAYLKDVLTRLPTQRASEIGQLLPHQWVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 0.0 95
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 5e-137 55
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-64 43
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-71 42
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 2e-66 41
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-68 41
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_3964 NP_746094.1 ISPpu14, transposase Orf3 VFG1700 Protein 4e-65 43
PP_3964 NP_746094.1 ISPpu14, transposase Orf3 VFG1513 Protein 1e-66 41