Gene Information

Name : PP_2907 (PP_2907)
Accession : NP_745051.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3306145 - 3306825 bp
Length : 681 bp
Strand : -
Note : similar to GB:L31579, and PID:468364; identified by sequence similarity

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAACTGACCAGCCACGGTCTGGA
AGTGGATTGGGCCGACAATGGCCGTGAAGGCCTGGCCAAAGCCATTGCGGGCGGCTACGACCTGATCACCCTGGACCGCA
TGCTGCCCGAGGTCGACGGCCTGACCATCGTCACCACCCTGCGCAACCTCAAGATCGCTACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGATGAGCGGGTGCGCGGCCTGCGTGCCGGCGGAGACGACTACCTGACCAAGCCGTTCGCCTCCGA
CGAAATGGCCGCGCGAGTCGAGGTATTGCTGCGCCGTAACAGCGTACCCACGACCCAGACCCGCTTGCAGGTTGCCGATC
TGCAGCTGGACCTGATCAGCCACGAGGCGCGCCGCGGTGACAACACCCTCAACCTGTTGCCCACCGAGTACAAGCTGCTG
GAGTACCTGATGCGCCACAGCGGCCAGGTGATCACGCGGATGATGATTTTCGAGGAAGTCTGGGGCTATCACTTCGATCC
GGGCACCAACCTGATCGACGTGCACATCGGCCGCCTGCGCAAGAAGATCGACTCACCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRNLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPTTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-46 46
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-41 45
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-41 44
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-38 43
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-39 42
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator BAC0083 Protein 5e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-34 42
PP_2907 NP_745051.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-32 41