Gene Information

Name : PP_2713 (PP_2713)
Accession : NP_744857.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3102811 - 3103473 bp
Length : 663 bp
Strand : +
Note : identified by match to TIGR protein family HMM TIGR01387

DNA sequence : 
ATGCGGCTGTTGCTGGTTGAGGATGACATCGCACTGGGGGAAGGGATCTGCGACGGCTTGCGCCAGGAGGGTTACACCCT
TGACTGGTTGCGGGACGGTGTCAGTGGCTTGCATGCGTTGCAGCACGAGACCTTCGACCTGGTGATCCTGGATCTTGGAT
TGCCCCGCATGGATGGCCTTGAGCTACTCAGGCGATTACGCGCCGGCGGCGACAGCTTGCCGGTGCTGATCCTCACCGCG
CGGGATGCCCTCGATGATCGCATTGCCGGCCTGGATGCCGGCGCCGATGATTACCTGGTCAAGCCTTTTGACCTCAATGA
GCTCAAGGCACGCCTGCGCGCCTTGCTGCGGCGCAGCGTCGGGCGCGCCAAGGTGCTGATCGAGCATGCCGGGGTCAGCC
TGGACCCGACCACCCAGCAAGTGCAATACAACGGCGTCGAGGTTGTGCTCACTCCCAAAGAGTATGTGCTGTTGCATGAG
TTGCTGGCACAGCCGGGCAAGGTATTCACACGTGAGCGCCTGACTCAACTGCTGTATGGCTGGGATGAAGAGCCGGAGAG
CAACACGCTGGAGGTGAACATCTACCATTTGCGCAAGAAGCTGTTCAACGGCCTGATTCGCACGGTGCGCGGAATTGGCT
ATCTGGTCGAGGTCAAGGCATGA

Protein sequence : 
MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGLELLRRLRAGGDSLPVLILTA
RDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSVGRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHE
LLAQPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-30 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2713 NP_744857.1 DNA-binding response regulator BAC0487 Protein 2e-30 50
PP_2713 NP_744857.1 DNA-binding response regulator NC_002516.2.879194.p Protein 7e-25 45
PP_2713 NP_744857.1 DNA-binding response regulator BAC0197 Protein 3e-28 43
PP_2713 NP_744857.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 4e-21 41
PP_2713 NP_744857.1 DNA-binding response regulator BAC0308 Protein 2e-26 41
PP_2713 NP_744857.1 DNA-binding response regulator Y16952.3.orf35.gene. Protein 2e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2713 NP_744857.1 DNA-binding response regulator VFG0473 Protein 5e-34 49
PP_2713 NP_744857.1 DNA-binding response regulator VFG0596 Protein 7e-25 43
PP_2713 NP_744857.1 DNA-binding response regulator VFG1390 Protein 4e-29 42