Gene Information

Name : PP_2680 (PP_2680)
Accession : NP_744824.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 3068909 - 3070429 bp
Length : 1521 bp
Strand : +
Note : identified by match to TIGR protein family HMM TIGR01722

DNA sequence :
ATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTT
CGTGCAGCCGTTGGCTGGCCAGTACTTCATCAACAGCTCGCCGGTCAATGGCCAGCCGATTGCCGAATTCCCGCGCTCCA
CGGCCCAGGACGTCGAGCGCGCCCTGGACGCCGCGCATGCCGCCGCCGAAGCCTGGGGCAAGACCTCGGTGCAAGACCGT
GCGCGGGTACTGCTGAAAATTGCCGACCGCATCGAACAGAACCTGGAAGTGCTGGCGGTTACCGAAAGCTGGGACAACGG
CAAGGCCATACGCGAAACCTTGAATGCCGACGTGCCGCTGGCAGCGGACCACTTCCGCTATTTTGCCGGTTGCATCCGCG
CCCAGGAGGGTGGCGTAGGCGAGATCAACGAAGGCACCGTGGCTTATCACATTCACGAGCCGCTGGGTGTGGTGGGGCAG
ATCATCCCGTGGAACTTCCCGCTGCTGATGGCCGCCTGGAAGCTCGCCCCGGCCTTGGCCGCTGGCAACTGCGTGGTGCT
CAAGCCCGCGGAGCAGACGCCGCTGTCGATTACCGTCTTTGCCGAACTGATCGCCGACCTGTTGCCGGCAGGCGTACTGA
ACATCGTCCAGGGCTTTGGCCGTGAGGCCGGTGAGGCGCTGGCCACCAGCAAGCGCATTGCCAAGATCGCGTTCACCGGG
TCCACCCCGGTGGGCTCGCACATCATGAAGTGCGCGGCCGAGAACATCATCCCGTCCACCGTCGAACTGGGTGGCAAGTC
GCCGAACATTTTCTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGT
TCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAG
GTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCA
ACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGC
GGCTGCAGGGTGACCTGGCCAGCGGTTACTACATTCAGCCAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAG
GAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGA
ATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAG
TGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACC
CACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTA
A

Protein sequence :
MIYAQPGTPGAVVSFKPRYGNFIGGEFVQPLAGQYFINSSPVNGQPIAEFPRSTAQDVERALDAAHAAAEAWGKTSVQDR
ARVLLKIADRIEQNLEVLAVTESWDNGKAIRETLNADVPLAADHFRYFAGCIRAQEGGVGEINEGTVAYHIHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLSITVFAELIADLLPAGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPVGSHIMKCAAENIIPSTVELGGKSPNIFFEDIMQAEPAFIEKAAEGLVLAFFNQGEVCTCPSRALIQESIYEPFMAE
VMKKIAKITRGNPLDTETMVGAQASEQQYDKILSYLEIAREEGAQLLTGGGAERLQGDLASGYYIQPTLLKGNNKMRVFQ
EEIFGPVVGVTTFKDEAEALAIANDSEFGLGAGLWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-149 66
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-156 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-156 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-156 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-155 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2680 NP_744824.1 aldehyde dehydrogenase VFG0082 Protein 2e-149 66