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Name : PP_2596 (PP_2596) Accession : NP_744740.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein/permease Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 2966617 - 2968410 bp Length : 1794 bp Strand : - Note : identified by match to TIGR protein family HMM TIGR00960 DNA sequence : ATGTCCGATTCATCAACGCCCCTTGACGATGCCGCCCCTTCAACAAACAAAGCCCGCAGCCCGCTCAGCCGTGTGCTTTC CCCCATTCGCGGGCGGCTGGCGCTGTCGGCGGTGCTGGCTGCGGCGGGTTCGATGCTGGCTTTGGTACCGCTGGCAGGCA TTGCGCACATCGCACACCTGGCGTTGAGCGAAACCGCCACATCGGGCGCCATTGGCCGGGCCATCGCAGCCAGCATCGCC AGCCTGTTCACTGGCATGACCCTGATCACCGCAGCCGAAATGCTGGCGCACCAGGCCGACAACCACATCACCCATCACCT GCGCGTGGCGATCGGCCAGCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAAGCGAAGTGAAACGGG CCATGCAGGACGACATCGGCACACTGCACAGCCTGACCGCGCACTTTTTCACCACACTGGGCCGCACCGTGGGCGCCGTG CTGATTTCCGTGGCCTACCTGTTCGCCATGGACTGGCGCCTTGCCGTGGTCGTGCTGCTGCCCTTCCCGGCGTTCTTCCT GTTTCTGCACCGTGCCATCAAGGCCAGCGCAGCGCATATGGGTGATGTGGTTGCGGGCATGGCGCGCATCGACAACGCGG TGGTCGAGTTCGTCAATGGCATGCCGCTGGTCAAAGCATTCGGCGGGCGCGGCAACGCGCAGGACCGCTACCGTGCCGCG GTCGATGCCTTTGCCAACACCTTCACCGGTTTCACCCGCCCACTGGTTGCGGCGATGGCACGGGCCAATGCCTTGATCGC GCCGGTGACGGTAGTGGGTGTGGTGCTGCTGGCAGGCATGGCGTTCGTGGCCCTGGGCTGGATAGAGCCGCTACAGATAC TGCCCTTTGCCTTGGTCGCACCTGGGTTGTGCGCGCCGCTACAGTTGTTGCACTACATTACCCACGACCTCAACAACGCG GTGGGGGCGGCCCAGCGGGTGCAGGTCCTGCTGGACACCCCGGTGCTGCCGGCCCCTGCAGTTGGCAGCCTGCCCAACGG CAGCGAACTGCGCGTGGAGCAACTGAGCCATGCCTACGCCCCCGGCAACAACGTGCTCGATGACGTCAGCTTCACCTTGG CCCCCGGCACCACGACCGCCATCGTCGGCCCCTCTGGCGCCGGCAAGTCGACCCTGGCGCGCCTGCTGCTACGGTTTTTC GACCCAGACGCCGGGCGCATCACCCTGGGTGGCGTCGACCTGCGGCAGATCGAGAGCCGCGAACTGTACCGACGCATAGG TTTCGTGCTGCAGGAGGTGCGGCTGATCCATGCAAGCGTGGCCGACAACATCGCCCTGGGCAAACCGGCTGCAACCCGCG AACAAGTCGAAGCGGCTGCGCGCCTGGCCAACATTCACACACGCATCCTGCAACTGCCGCGTGGCTATGACTCGGTGGTG GGCGAAGACGCGCAATTGTCCGGGGGCGAACAGCAGCGCCTGAGCATTGCTCGCGCCGTGCTGCTCGACCCGCCCGTGCT GGTACTGGACGAGGCCACCGCAGCCGCCGACGCCGAGAGCGAGGCGGCGATCCAGGATGCCCTGTCGCGTTTCGCCCGGG GTCGCACCCTACTGGTCATCGCCCACCGGCTGGACACGGTGATGCATGCCGACCAGATCCTGGTGCTGGACCAAGGCGCC CTGTGTGAACAAGGGCGCCACAGCGAATTGCTCAACCGCCAAGGCCTTTATGCACGGCTGTGGGCGCAGGGTGGTTATCA GGACACCGTGAAAAAGGCGCTGCCAGCATGCTGA Protein sequence : MSDSSTPLDDAAPSTNKARSPLSRVLSPIRGRLALSAVLAAAGSMLALVPLAGIAHIAHLALSETATSGAIGRAIAASIA SLFTGMTLITAAEMLAHQADNHITHHLRVAIGQRLMQVPLGWFSERASSEVKRAMQDDIGTLHSLTAHFFTTLGRTVGAV LISVAYLFAMDWRLAVVVLLPFPAFFLFLHRAIKASAAHMGDVVAGMARIDNAVVEFVNGMPLVKAFGGRGNAQDRYRAA VDAFANTFTGFTRPLVAAMARANALIAPVTVVGVVLLAGMAFVALGWIEPLQILPFALVAPGLCAPLQLLHYITHDLNNA VGAAQRVQVLLDTPVLPAPAVGSLPNGSELRVEQLSHAYAPGNNVLDDVSFTLAPGTTTAIVGPSGAGKSTLARLLLRFF DPDAGRITLGGVDLRQIESRELYRRIGFVLQEVRLIHASVADNIALGKPAATREQVEAAARLANIHTRILQLPRGYDSVV GEDAQLSGGEQQRLSIARAVLLDPPVLVLDEATAAADAESEAAIQDALSRFARGRTLLVIAHRLDTVMHADQILVLDQGA LCEQGRHSELLNRQGLYARLWAQGGYQDTVKKALPAC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| irp2K | YP_005163491.1 | lipid A export ATP-binding/permease protein msbA | Not tested | Not named | Protein | 3e-63 | 41 |
| irp2K | YP_005134503.1 | lipid A export ATP-binding/permease protein msbA | Not tested | Not named | Protein | 3e-63 | 41 |
