Gene Information

Name : PP_2487 (PP_2487)
Accession : NP_744635.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2833903 - 2835414 bp
Length : 1512 bp
Strand : -
Note : identified by match to TIGR protein family HMM TIGR01722

DNA sequence : 
ATGAGGTACCCCATGAAAGATTCCAGCGATACCCATCCGAATCACCTTCCCGACAGCTGCTACGGCCTGTTTATCGACAA
CCAGTGGGTTACGGCCGAATACGGTGAAACCCTCGACATTATCAACCCCGCCAACGGAAAAATTCTCACCAACATTCCAA
ACGCCACAGCTGCCGACGTCGACCGCGCGGTGCAGGCCGCACAGCGCGCCTTCGTGACCTGGCGTACCACCTCACCAGCG
GAACGCGCCAATGCGCTGTTGAAGATCGCCGACCTACTGGAAGCCGATGCCGATCGGTTCGCGGTTCTGGAAACCCTTGA
TGTAGGCAAACCCATTCGTGAAAGTCGCTCCGTCGACATCCCACTGGCGATTGATCACTTCCGCTACTTCGCTGGCGTAA
TCCGCAGCCAATCGGATGAGGCGGTCATGCTGGATGAGCAAACACTCAGCATCGCTCTCAGTGAACCCCTCGGCGTCGTG
GGCCAAGTGATTCCGTGGAACTTCCCGCTTCTTATGGCCGCCTGGAAGATCGCTCCAGCCATCGCGGCGGGTAACACCGT
AGTTATCAAACCTTCTGAGCTGACCCCGGTAACCATCCTTGAACTAGCGAAGATCTTCGCCAAGGTACTTCCGGCCGGCG
TGGTCAACATCGTCACAGGCTTAGGCACCACAGTTGGACAGGCGTTACTGGATCATCCGGACCTACGCAAGCTTGCCTTC
ACCGGCTCGACGCGTGTCGGCGAACTCGTCGCCAATGCGGCAGCGAAGAAAATAATTCCCGCCACCCTTGAACTGGGCGG
CAAGTCGGCCAACATCGTTTTCCCCGATGCGAACTGGGACAAGGCCGTGGAAGGCGCAGTCCTCGCCATCCTGTGGAACC
AAGGCCAAGTCTGCGAATCCGGCGCTCGGCTGTTCGTTCACGAATCCATCTACGAGCGATTCCTGGCTGAGCTCAAGCAT
AAGTTCGAAGCTGTGCGTGTGGGTGACCCATTGAACCCGGACACCATGATGGGCGCACAGGTCAGCAAGACCCAGATGGA
ACGGATCCTCGGCTACGTCGATATCGCCAAAGAGGAAGGTGCCGAGGTACTGATCGGCGGCGGTCGTCTTACAGGTGCCG
ATTACGATGCCGGCTTCTTCATCCAGCCAACGATTCTGGTCGGTGTTCGCAACGATATGCGCGTCGCCTACGAGGAAATT
TTCGGCCCAGTTCTGTGCGTCATTCCTTTCAAGGATGAAGCGGAGGTCATCGCCATGGCCAACGACTCCGAGTACGGCCT
AGCGGGTGCAGTCTGGACCCAAGACATCAACCGGGCGTTGCGTGTGGCACGCGCGGTGGAAACCGGACGTATGTGGGTAA
ATACCTACCATGAGATCCCTGCCCACGCCCCCTTTGGTGGCTATAAGAAATCTGGCCTGGGACGGGAAACTCACAAGTCA
ATGCTGGAAGCCTACAGCCAGAAGAAGAACATCTACGTCAGCCTCAACGAAGCACCGCTCGGGCTCTTCTGA

Protein sequence : 
MRYPMKDSSDTHPNHLPDSCYGLFIDNQWVTAEYGETLDIINPANGKILTNIPNATAADVDRAVQAAQRAFVTWRTTSPA
ERANALLKIADLLEADADRFAVLETLDVGKPIRESRSVDIPLAIDHFRYFAGVIRSQSDEAVMLDEQTLSIALSEPLGVV
GQVIPWNFPLLMAAWKIAPAIAAGNTVVIKPSELTPVTILELAKIFAKVLPAGVVNIVTGLGTTVGQALLDHPDLRKLAF
TGSTRVGELVANAAAKKIIPATLELGGKSANIVFPDANWDKAVEGAVLAILWNQGQVCESGARLFVHESIYERFLAELKH
KFEAVRVGDPLNPDTMMGAQVSKTQMERILGYVDIAKEEGAEVLIGGGRLTGADYDAGFFIQPTILVGVRNDMRVAYEEI
FGPVLCVIPFKDEAEVIAMANDSEYGLAGAVWTQDINRALRVARAVETGRMWVNTYHEIPAHAPFGGYKKSGLGRETHKS
MLEAYSQKKNIYVSLNEAPLGLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-105 52
aldA ACK75580.1 aldehyde dehydrogenase Not tested VPI Protein 4e-67 50
aldA ACK75590.1 aldehyde dehydrogenase Not tested VPI Protein 2e-68 50
aldA ACK75596.1 aldehyde dehydrogenase Not tested VPI Protein 2e-68 50
aldA ACK75577.1 aldehyde dehydrogenase Not tested VPI Protein 9e-69 50
aldA ACK75588.1 aldehyde dehydrogenase Not tested VPI Protein 4e-68 50
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 50
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 50
aldA ACK75585.1 aldehyde dehydrogenase Not tested VPI Protein 2e-68 50
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 50
aldA ACK75593.1 aldehyde dehydrogenase Not tested VPI Protein 2e-68 50
aldA ACK75574.1 aldehyde dehydrogenase Not tested VPI Protein 2e-68 50
aldA ACK75582.1 aldehyde dehydrogenase Not tested VPI Protein 3e-68 50
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-110 50
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 1e-73 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_2487 NP_744635.1 aldehyde dehydrogenase VFG0082 Protein 5e-106 52