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Name : PP_0245 (PP_0245) Accession : NP_742413.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : S1 RNA-binding domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 298539 - 301124 bp Length : 2586 bp Strand : - Note : identified by match to PFAM protein family HMM PF00575 DNA sequence : ATGAGAATCTTGTCACCTTCAGCGGTGTTTGGCGTGCCGGTCATGAATAACTCCTCTGATATCGCCGCGCATTATGGCGT AGCCATTGCTGCACGTTGCGTGAGCATTGTTAGCAGATTTTTCCCCCGGCGCCAGTTCCGGCTGGCCGGGCGCCATCACC GCAAGCCGTTTGCGATGGGTATAATGCGCGGCTTTCATCCAGCGCCGCCGGGCAAAAAGCCCACAGGCGACCCCCGTATT CACAAATGTCAGGTGGTTTACATGGACAGCATCAACAGCCGTATCGCCGAGGAACTGGGCGTACGCCCGCAGCAGGTCGA GGCGGCCGTGAGCCTGTTGGACGAAGGCTCGACCGTGCCCTTCATCGCCCGCTATCGCAAGGAAGTGACCGGTAGCCTTG ACGACACTCAGTTGCGCCACCTGGAAGAGCGCCTGCGCTACCTGCGCGAACTCGACGAGCGCCGCGCCAGCATCCTTTCC AGCATCGAGGAACAGGGCAAGCTGACCCCGGAACTGGCCCGCGAGATCAAGCTGGCCGACACCAAGACCCGCCTCGAAGA CCTGTACCTGCCGTACAAGCAGAAGCGCCGCACCAAGGGCCAGATCGCCCTGGAAGCCGGCCTTGGCGAACTGGCCGATG GCCTGTTCAACGACCCGACCCTGGCCCCGGAAAGCGAAGCCGCACGCTTCGTCAACGCCGAAAAGGGCGTGGCCGACGTC AAGGCCGCGCTGGAAGGCGCCAAGTACATCCTGATGGAGCGCTTTGCCGAAGACGCCGCCCTGCTCGACAAGCTGCGCAG CTACCTCAAGCAGGAAGCCGTGCTCAGCGCCCGCGTCGTGGCCGGCAAGGAAGAAGAAGGCGCCAAGTTCCGCGACTACT TCGCTCATGACGAGCTGCTGCGTACTGCGCCATCGCACCGTGCCCTGGCGATCTTCCGCGGGCGCAACGAAGGCGTGTTG AGCGTCTCGCTGAAGGTCGGCGAAGAACTGCCCGGCACCCTGCACCCATGCGAGCTGATGATCGGCAACCACGTCGGCAT CGAGAACCGCAGCCGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACC TGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGAC CTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCACCGGCTGCAAGATCGCCGT GGTCGACGCAACCGGCAAACTGCTGGACCACACCACGGTCTACCCGCACGCGCCGAAGAACGACTGGGACCGCACCATTT CCATCATGGCCGCACTGTGCGCCAAACACTCGGTGGAGCTGATCGCCATTGGCAACGGTACCGCCAGCCGCGAAAGCGAC AAGCTGGTGACCGAGTTGGTCAAGAAATATCCCGCCCTGAAAATCACCAAGATCATGGTTTCCGAAGCCGGCGCTTCGGT GTACTCGGCATCGGAATTGGCCGCCCGCGAGTTCCCGGACCTGGACGTGTCGATCCGCGGCGCCGTGTCGATCGCCCGAC GCCTGCAGGATCCGCTGGCCGAACTGGTGAAGATCGATCCGAAATCCATCGGTGTCGGCCAGTACCAGCACGACGTGTCC CAACTGAAACTGGCACGTGGCCTGGACGCGGTAGTCGAGGACTGTGTGAACGCCGTGGGCGTGGACGTGAACACCGCTTC GGTGGCGCTGCTGACGCGCATCTCCGGCCTCAATGCCACCCTGGCACAGAACATCGTCGCCCACCGCGATGCCAATGGTC CGTTTGCCACCCGGGCAGCGTTGAAAAAGGTCAGCCGCCTGGGTGAGAAAACCTTCGAGCAGGCCGCCGGCTTCCTGCGC GTGATGAACGGCGACAACCCGCTGGACGCCTCTGCGGTGCACCCTGAGGCCTATCCACTGGTGCAGCGCATTGCTGCCGA TACCGACCGCGACATCCGCTCGCTGATTGGTGACAGCAGCTTCCTCAAGCGCCTGGACCCGAAAAAGTTCACCGACGAAA CCTTCGGCCTGCCAACCGTCACCGACATCCTGCAAGAGCTGGACAAGCCCGGCCGCGACCCACGTCCGGAGTTCAAGACC GCCACCTTCCAGGACGGCGTCGAAGACCTCAAGGACCTGGAACCGGGCATGATCCTCGAAGGCGTGGTGACCAACGTTAC CAACTTCGGTGCCTTCGTCGACATCGGCGTGCATCAGGACGGCCTGGTGCATATCTCGGCGCTGTCGGAGAAGTTCGTCA AAGACCCGCGTGAGGCGGTCAAGGCCGGCGATGTGGTCAAGGTCAAGGTCATGGAAGTGGACATCCCGCGCAAACGCGTC GGCCTGTCCATGCGCATGAGCGACACCCCGGGCGAGAAGGTCGAAGGCAACCGCGGTGGTAATCGTGGCAATGGCGGCAA TCGCCAGCAGCAGGCACCGCGTCAGCGCGAAACCGCCACCGCAGCCCCGGCCAACAACGCCATGGCCGCCCTGTTCGCCA ACGCCAAGCAACTGAAGAAGAAGTAA Protein sequence : MRILSPSAVFGVPVMNNSSDIAAHYGVAIAARCVSIVSRFFPRRQFRLAGRHHRKPFAMGIMRGFHPAPPGKKPTGDPRI HKCQVVYMDSINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRASILS SIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPTLAPESEAARFVNAEKGVADV KAALEGAKYILMERFAEDAALLDKLRSYLKQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVL SVSLKVGEELPGTLHPCELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDSAEGEAINVFAHNLHD LLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKNDWDRTISIMAALCAKHSVELIAIGNGTASRESD KLVTELVKKYPALKITKIMVSEAGASVYSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVS QLKLARGLDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRLGEKTFEQAAGFLR VMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDPKKFTDETFGLPTVTDILQELDKPGRDPRPEFKT ATFQDGVEDLKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRV GLSMRMSDTPGEKVEGNRGGNRGNGGNRQQQAPRQRETATAAPANNAMAALFANAKQLKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 63 |
