Gene Information

Name : ssuB (PP_0240)
Accession : NP_742408.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Resistance
Product : aliphatic sulfonate ABC transporter ATP-binding subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1116
EC number : -
Position : 294596 - 295408 bp
Length : 813 bp
Strand : +
Note : part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease

DNA sequence :
ATGACCGTGCTCAAGGAACAGCCGCCACGCCTGCTGCGTGGCACCCCGCTGGCCTCCAAGGGCCTGCGCAAGACCTTTGG
CCAGCGCGAAGTTCTGAAGGGTATCGACCTGCACATTCCGGCCGGCCAGTTCGTGGCCATTGTCGGCCGCAGCGGCTGCG
GCAAGAGCACTTTGCTGCGGCTGCTGGCCGGGCTGGACCAGCCCACCGCCGGGCAGCTGCTGGCCGGTGCCGCGCCGCTG
GAAGAGGCCCGTGAAGAAACCCGCCTGATGTTCCAGGACGCGCGGCTGCTGCCGTGGAAGAAGGTGATCGACAACGTTGG
CCTTGGGCTGTCTGGCGACTGGCGCCCGCGTGCGCTGGAGGCCTTGGATGCGGTTGGCCTGGCCGACCGCGCCAACGAAT
GGCCGGCAGCGCTCTCGGGAGGCCAGAAGCAGCGCGTGGCTTTGGCCCGAGCCTTGATTCACCAGCCCCGCCTGCTGCTG
CTGGACGAGCCGCTGGGGGCGCTGGATGCGTTGACCCGTATCGAGATGCAGCAACTGATCGAACGCCTGTGGCGTCAGCA
CGGCTTCACTGTACTGCTGGTCACCCACGACGTCAGCGAGGCGGTTGCCGTGGCTGACCGGGTGATCCTGATCGAGGACG
GCGAGGTCGGGCTCGACCTCACTGTTGACCTGGCACGGCCCCGGGCGCGTGGTTCGCACCGTCTGGCCGCGCTGGAAAGC
GAAGTGCTCAACCGTGTTCTGTCCACCCCGGGCACTGCGCCCGAGCCGGATCCTGTAGCCCCTCTGCCCACGCAACTGCG
CTGGGCGCATTGA

Protein sequence :
MTVLKEQPPRLLRGTPLASKGLRKTFGQREVLKGIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDQPTAGQLLAGAAPL
EEAREETRLMFQDARLLPWKKVIDNVGLGLSGDWRPRALEALDAVGLADRANEWPAALSGGQKQRVALARALIHQPRLLL
LDEPLGALDALTRIEMQQLIERLWRQHGFTVLLVTHDVSEAVAVADRVILIEDGEVGLDLTVDLARPRARGSHRLAALES
EVLNRVLSTPGTAPEPDPVAPLPTQLRWAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 8e-37 47
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-21 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-23 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssuB NP_742408.1 aliphatic sulfonate ABC transporter ATP-binding subunit NC_012469.1.7686878. Protein 3e-21 41