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Name : gabD (PP_0213) Accession : NP_742381.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase I Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 263249 - 264691 bp Length : 1443 bp Strand : + Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent DNA sequence : ATGCAGCTCAAAGACGCTCAGTTGTTCCGCCAGCAAGCCTATATCAATGGTGAGTGGCTGGATGCGGACAACGGCCAGAC CATCAAGGTGACCAACCCGGCCACCGGCGAAGTCATCGGTACCGTGCCGAAGATGGGTACCGCGGAAACCCGCCGCGCCA TCGAAGCCGCCGACAAGGCCCTGCCGGCCTGGCGTGCCCTGACTGCGAAAGAGCGCTCGGCCAAGCTGCGTCGCTGGTTC GAACTGATGATCGAGAACCAGGACGACCTGGCTCGCCTGATGACCACCGAACAGGGCAAGCCGCTGGCCGAAGCCAAGGG CGAAATCGCCTACGCTGCCTCGTTCATCGAGTGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACACCATCCCGGGCC ACCAGCCAGACAAGCGCCTGATTGTCATCAAGCAGCCAATCGGCGTTACCGCGGCCATCACTCCGTGGAACTTCCCGGCC GCCATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCTGGCTGCACCATGGTCCTCAAGCCGGCTTCGCAAACCCCATA CTCCGCTCTGGCCCTGGTCGAGCTGGCCCACCGTGCCGGCATCCCGGCTGGCGTGCTGAGTGTGGTTACCGGCAGCGCCG GCGAAGTTGGCGGCGAACTGACCGGCAACTCCCTGGTACGCAAGCTGTCCTTCACCGGCTCGACCGAAATCGGTCGCCAG CTGATGGAAGAATGCGCCAAGGACATCAAGAAGGTTTCCCTGGAGCTGGGTGGCAACGCCCCGTTCATCGTGTTCGACGA CGCCGACCTGGACAAGGCGGTCGAGGGCGCGATCATCTCCAAGTACCGTAACAACGGCCAGACCTGCGTCTGCGCCAACC GTATCTACGTGCAGGACGGCGTCTACGACGCGTTCGCCGAGAAGCTGGCCGCTGCAGTTGCCAAGCTGAAGATCGGTAAC GGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGATGGCAAGGCTGTCGCCAAGGTCCAGGAACACATCGAGGACGC CGTCAGCAAAGGCGCCAAAGTGCTGTCCGGTGGCAAGCTGATCGAAGGCAACTTCTTCGAGCCGACCATCCTGGTTGACG TACCGAAGACCGCTGCTGTCGCCAAGGAAGAGACGTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAA GTCATCGCCATGTCCAACGACACCGAGTTCGGGCTGGCCTCGTACTTCTACGCCCGCGACATGAGCCGTGTGTTCCGTGT CGCCGAAGCCCTGGAATACGGCATGGTGGGTATCAACACCGGCCTGATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCA AGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTC TGA Protein sequence : MQLKDAQLFRQQAYINGEWLDADNGQTIKVTNPATGEVIGTVPKMGTAETRRAIEAADKALPAWRALTAKERSAKLRRWF ELMIENQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVLKPASQTPYSALALVELAHRAGIPAGVLSVVTGSAGEVGGELTGNSLVRKLSFTGSTEIGRQ LMEECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRIYVQDGVYDAFAEKLAAAVAKLKIGN GLEEGTTTGPLIDGKAVAKVQEHIEDAVSKGAKVLSGGKLIEGNFFEPTILVDVPKTAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDMSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-155 | 68 |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 7e-69 | 41 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 3e-86 | 41 |
