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Name : wbpM (PP_1805) Accession : NP_743960.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2028258 - 2030324 bp Length : 2067 bp Strand : + Note : similar to GP:9949255, and GP:6690122; identified by sequence similarity DNA sequence : GTGGGGCGCCATGCTCCGGTTGTTCAATCGAGGTCCTTTTGCGGTGAGGAGAGCCGAATGAGCGACGCAAAGAACAGCAG GGTGCGTGAGTACCTAGTTAACTTGTCCAGGCGGAAAAAGCGTCTTGTGCAAGTGTGCGCCGACGTGGTGCTGATCTGGT TGGCGTTATGGTTGTCTTTTATCGTGCGCCTGGGCATCGATGAAATGTACAACCCGGTCATCAAACACGCCTGGTTGTTC ATGGTTGCGCCTCTCGTAGCCATTCCGCTGTTCATTCGTTTTGGCATGTACCGGGCGGTGATGCGCTACTTCGGCAATGA TGCATTGGTGACCATTATCAAGGCCGTTACCCTGTCATCGCTCATTCTGGCTGTGGTTGTGTACTGGTACAGCAACCATC AGGTAATCGTGCCGCGCTCGATCATTTTCAACTATTGGTGGTTGAGCATGGTCATCATTGGTGGTTTACGCCTGATCATG CGCCAGTATTTCCTGGGTGACTGGTTTACCGGCGCCCATCAGATACCGTTCGCCAACCGCGATGATGGCCTGGTCAAGGT AGCCATCTATGGTGCAGGCACCGCCGGCAACCAGCTGCTGGCAGCGTTGCGCATGGGGCGGGCGATGCGCCCGGTGGCGT TCATTGATGATGACAGTGACCTTGCCAACCGGGTCATTTCCGGTTTGCAGGTGTACAAGCCCAAGCATCTGCAGCAGATG ATCAAGGAAACCGGTGCACAGGAAATCCTCCTCGCCCTGCCTTCGGTATCGCGCGCCCGGCGCAAGGAGATTCTCGCCTT GCTCGAACCTTACCCGTTGCACGTGCGCAGCGTGCCGGCCTTTGCCGACCTGGCAAGTGGCCGGGTCAAAGTGGATGACA TCCAAGACGTGGACATTGCCGATTTGCTTGGGCGTGACCCGGTACCCGCCAAGGAAGGGCTGCTCGAACGCTGCATCCAC AAGCAAACGGTACTGGTCACCGGGGCCGGTGGCTCCATCGGCTCCGAGCTTTGCCGCCAGATCATAGGGCTTGGGCCAAC GACATTGCTGCTGTTCGACCACAGCGAGTACAACCTCTACGCTATCCTCAGTGAGCTGGAGCAACGCGTTGCGCGCGAGT CGCTGCCGGTGCGACTGCTGCCCATTCTGGGGTCGGTACGCAATCAGCAGCATCTTGCCCACGTTATGTCCACTTGGCGG GTAGCCACCGTCTACCACGCGGCGGCTTACAAACATGTGCCCATGGTTGAGCACAACATGGCGGAGGGTATACTCAACAA TGTGTTCGGCACGCTTTGTACCGCACAGGCTGCTTTGCAATCAGGCGTTGCCAACTTCGTGCTTATCTCGACTGACAAGG CGGTGCGCCCCACGAACGTGATGGGCGGTACCAAGCGTCTTTCCGAGTTGATTCTGCAAGCACTAAGCCGCGAGGCGGCA CCCGTCATGTACGGTGACAGCAGCAAGATCGCCCGGGTGAACAAAACCCGCTTCACCATGGTGCGCTTTGGCAATGTGCT GGGCTCCTCTGGCTCGGTGATCCCGTTGTTCCACAAGCAGATCAAGGCCGGTGGCCCAATTACGGTTACCCACCCGAAGA TTACCCGCTATTTCATGACTATCCCCGAAGCCGCTCAACTGGTGGTTCAGGCAGGGGCGATGGGGCAGGGCGGGGACGTA TTTGTTCTCGACATGGGGGAGCCGGTAAAAATTGTTGAGCTGGCTGAGAAAATGATTCATCTCTCGGGCCTTAGCGTACG TAGCTCGGGTAACCCCAATGGTGATATCGCCATCGAGTTCACGGGGTTGCGCCCAGGTGAGAAGCTTTTTGAAGAGTTGT TGATTGGCGATGACGTTTCGCCTACCGTCCACCCGATGATCATGGTAGCGAATGAAGACTACGTCACTTGGGACGTCTTG CGTGAACGTATTGCCGTGTTACTCAATGCAGTGGCGGTGGATGACTTTGGCCGTATCCGGCAACTGTTGCGTGAACTAGT GAACGGGTATGTGCCGGAAGGAGAAATTGTCGACTGGATCTACCAACAGCAGCGGCAGGACAGTTGA Protein sequence : MGRHAPVVQSRSFCGEESRMSDAKNSRVREYLVNLSRRKKRLVQVCADVVLIWLALWLSFIVRLGIDEMYNPVIKHAWLF MVAPLVAIPLFIRFGMYRAVMRYFGNDALVTIIKAVTLSSLILAVVVYWYSNHQVIVPRSIIFNYWWLSMVIIGGLRLIM RQYFLGDWFTGAHQIPFANRDDGLVKVAIYGAGTAGNQLLAALRMGRAMRPVAFIDDDSDLANRVISGLQVYKPKHLQQM IKETGAQEILLALPSVSRARRKEILALLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGLLERCIH KQTVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARESLPVRLLPILGSVRNQQHLAHVMSTWR VATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCTAQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAA PVMYGDSSKIARVNKTRFTMVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAMGQGGDV FVLDMGEPVKIVELAEKMIHLSGLSVRSSGNPNGDIAIEFTGLRPGEKLFEELLIGDDVSPTVHPMIMVANEDYVTWDVL RERIAVLLNAVAVDDFGRIRQLLRELVNGYVPEGEIVDWIYQQQRQDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-81 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpM | NP_743960.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-123 | 46 |
| wbpM | NP_743960.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-79 | 42 |
