|
Name : xerD (PP_1468) Accession : NP_743626.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1672953 - 1673849 bp Length : 897 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGCCCGCCCTCGACCACCCCCTGATCGACCAGTTCCTTGACGCCCTATGGCTGGAAAAAGGCCTGTCCGACAACACCCG CGTGTCCTATCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCG ACCTGATCCTCGATCACTTGGCCTGGCGCCTGGATCAGGGCTACAAGCCACGTTCCACGGCGCGTTTCCTCTCCGGCCTG CGCGGCTTCTTCCGTTACCTGCTGCGGGAAAAGCTGGTGGCCATCGACCCGACCCTGCAGGTCGACATGCCGCAATTGGG CAAGCCGCTACCCAAGTCGCTGTCCGAAGCCGACGTCGAAGCCCTGTTGCAGGCTCCGGACCTGGGCGAAGCCATTGGCC AGCGCGACCGTGCCATGCTCGAAGTGCTCTACGCGTGCGGCCTTCGGGTTACCGAACTGGTCAGCCTGACCCTCGACCAG GTCAACCTGCGCCAGGGTGTGCTGCGGGTGATGGGCAAGGGCAGCAAGGAGCGTCTGGTGCCCATGGGTGAAGAGGCGGT GGTGTGGTTGGAGCGCTACCAGCGCGATGGCCGCGCCGAACTGCTCAATGGCCGGCCCAGCGACGTGCTGTTCCCCAGTC AGCGCGGCGAGCAGATGACGCGCCAGACCTTCTGGCACCGTATCAAACACCACGCACGGGTTGCCGGCATCGACAAGCCG CTGTCGCCGCACACCCTGCGGCATGCCTTCGCCACCCACCTGCTCAACCACGGTGCCGACTTGCGGGTGGTACAGATGCT GCTGGGCCACAGTGACCTGTCGACCACGCAGATCTATACCCACGTCGCCAAGGCGCGCCTGCAGCAGTTGCACGCCCAGC ACCACCCGCGTGGATGA Protein sequence : MPALDHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQGYKPRSTARFLSGL RGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQ VNLRQGVLRVMGKGSKERLVPMGEEAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKP LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 9e-67 | 62 |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 9e-67 | 62 |
