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Name : xcpR (PP_1047) Accession : NP_743208.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1197689 - 1199140 bp Length : 1452 bp Strand : + Note : identified by match to TIGR protein family HMM TIGR01420 DNA sequence : GTGATGCTGCCCTATCGCCAGGCACGGCAGAGCGGAGTGGCCATGGCCCCGGCAGAGCAGGGCTGGCAGCTATGGCTGCG GCCCGACGCCGACAATGCCCAGTTGCAGGAGTTGCTGCGTGTGCATGGCCAGCCAAGCCTGCTCGAATACCTGGAACCTG CGCTGTTCGACGAGCGCCTTGGCCAGCTGTACCAGGCCGGCGATGCCGCCACCGAAGCGTTGATCGAAGGCATCGGCGAC CAGGTCGACCTGGATAGCCTGATGAGCGAGATGCCGCGCATCGAAGACCTGCTTGAAAGCGACGACGAAGCCCCGGTGAT CCGCCTGATCAACGGCCTGTTCGGCCAGGCGCTGCGGCTGCGCGCCTCGGATATCCATATCGAGACCTTCGAGCAGAGCC TGGTGGTGCGTCTGCGGGTCGATGGCCACCTGCGTGAGGTGCTGCGTCCTCCACGTGCGTTGTCGGCCATGCTGGTATCA CGGATCAAGGTCATGGCCCGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGG GCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTGATGCGCGTGCTCGACAAGCAGG CCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAAC GGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGCCTCAACGATGG CAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTG CCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCATCCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGAT CAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGT AGGCGCAGTGACCCGCCTGCGCGACATGGGCATCGAGCCCTTCCTGATCGCCTCGTGCCTGCGCGGCGTCCTGGCCCAGC GCCTGGTGCGGCGTTTGTGCAGCTGTGCCGTGGCGCACCCGCTACAGGCTGCCGAGCGCGAGCTATGGCCTGAGCTTGCG GCGTTGGGCTGCTCTTATCACGCCGTGGGTTGCGAGCAGTGCCAGGGCAGCGGTTATATCGGGCGACTGGGGTTGTACGA ATTCATCGAGCTGGACGCTGGGCTCATCGGCCTGTTGTACGACGGCGCCAGTGAGCTGGCCATGCAGGACTATCTGGCTG ACCGGCGCCAAAGCCTGGTGGCGATGGCCAGCGATTGCCTGGCTCGCGGTGAGACCAGCCTGGCCGAAGTGCTGCGCGTG GTGCAGGGCTAA Protein sequence : MMLPYRQARQSGVAMAPAEQGWQLWLRPDADNAQLQELLRVHGQPSLLEYLEPALFDERLGQLYQAGDAATEALIEGIGD QVDLDSLMSEMPRIEDLLESDDEAPVIRLINGLFGQALRLRASDIHIETFEQSLVVRLRVDGHLREVLRPPRALSAMLVS RIKVMARLDIAEKRQPQDGRITLRAAGREVDVRVSTLPGIHGERVVMRVLDKQASLLALDNLGMPAAVLQGLRSCLARPN GIVLSTGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVEYAIAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRD QETAQIAVQASLTGHLVLSTLHTNNAVGAVTRLRDMGIEPFLIASCLRGVLAQRLVRRLCSCAVAHPLQAAERELWPELA ALGCSYHAVGCEQCQGSGYIGRLGLYEFIELDAGLIGLLYDGASELAMQDYLADRRQSLVAMASDCLARGETSLAEVLRV VQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-106 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-106 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG2048 | Protein | 1e-105 | 56 |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG0182 | Protein | 1e-104 | 55 |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG1876 | Protein | 7e-109 | 51 |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG2426 | Protein | 3e-65 | 48 |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG1880 | Protein | 8e-68 | 45 |
| xcpR | NP_743208.1 | type II secretion system protein E | VFG0112 | Protein | 1e-70 | 41 |
