Gene Information

Name : yfeD (HD1024)
Accession : NP_873513.1
Strain : Haemophilus ducreyi 35000HP
Genome accession: NC_002940
Putative virulence/resistance : Virulence
Product : iron (chelated) transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 814390 - 815220 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence : 
ATGACTGATTTAATTAAATGGTTTAGCGAGCCTTTTCAGTTTGAATTTATGCAAATGGCATTATTAACTGCCGTACTTGT
TGCTTCAGTATGTGCGGTATTATCTTGCTATTTAATTCTAAGAGGTTGGTCCTTAATGGGAGATGCTATTTCACACGCCG
TGCTACCCGGTGTTGTGGTTGCGAATCTTGCAGGATTGCCACTGGCTATTGGCGCCTTTAGTTCAGGTTTATTTTGTGCC
ATCTCTATTGGTTATCTAAAAGAAAATAGCCGCATAAAAGAAGATACGTTGATGGGTATTATGTTTGCAGGCCTTTTTGC
CTTAGGTATTGTACTTTTTACCGCATTACCTTCAGAACAGCATTTAACTCACCTATTATTTGGTAACTTACTTGGGGTAA
CAACGCCTGAATTTATACAAACGGTGATAATTTGTATCATTACTTTCGCTTTAATGTTATTTAAACGAAAAGACTTTTTA
GTCTATTGTTTTGATCTTAACCACGCCAAAGTGATTGGTTTACCCGTAAAATGGCTTCATTATGGTTTATTGTCGATCTT
AGCATTAACAATTATCAGTGCAATGCAAGTAGTCGGTGTTATTTTGGTTGTCGCAATGCTCATTGCCCCGGGGATTACTG
CTTATCAATTATCAAATCGCTTTGACAAAATGCTCGTGATTGCCCTCGCAGTGGCAATTAGTTCATCTATATTAGGTACT
ATTTTAAGCTATCATATTGATTCAGCTACCGGTCCGACTATTATTTTAATTCAATCTTTGATTTTTATCGCCGTAGTCAT
TAAAGGGCAGTTACAACAAACTAAGCGGTAA

Protein sequence : 
MTDLIKWFSEPFQFEFMQMALLTAVLVASVCAVLSCYLILRGWSLMGDAISHAVLPGVVVANLAGLPLAIGAFSSGLFCA
ISIGYLKENSRIKEDTLMGIMFAGLFALGIVLFTALPSEQHLTHLLFGNLLGVTTPEFIQTVIICIITFALMLFKRKDFL
VYCFDLNHAKVIGLPVKWLHYGLLSILALTIISAMQVVGVILVVAMLIAPGITAYQLSNRFDKMLVIALAVAISSSILGT
ILSYHIDSATGPTIILIQSLIFIAVVIKGQLQQTKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-51 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-51 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-51 51
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-51 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-51 51
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 7e-30 41
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 5e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_873513.1 iron (chelated) transport system membrane protein BAC0442 Protein 2e-67 59
yfeD NP_873513.1 iron (chelated) transport system membrane protein BAC0352 Protein 4e-51 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_873513.1 iron (chelated) transport system membrane protein VFG0528 Protein 3e-51 51