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Name : clpB (HD0565) Accession : NP_873111.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit B Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 431865 - 434435 bp Length : 2571 bp Strand : - Note : - DNA sequence : ATGAATTTCGAAAAATTTACAACTAAATTGCAAGAAGCATTAAATGAAGCACAATCATTAGCAGTCGCCAAAGATAATGC CTATATTGAACCGGTTCATTTACTTTATGCCTTAGTAAAACAACAAGATGGTGCAATCGCCCCGTTATTTACTACCTTAA ATGTATCAACCCAAACGTTAATCAACGAGTTAGAACTGATCTTAAATCAATTACCACAAGTAACCGGCACAACAACACAA GCATCACAACAACTTATTCGTTTATTAAATCAAACGGCTAAATTAGCCCAACAATTTAACGACAGCTTTATTTCATCAGA ATTATTTTTACTGGCTGCATTAGATGATCATGGCAGCTTAGGTAAATTATTTAAAGCATTTGGCTTAACAAAAGAAAACG TCACGCAAGCAATCAGCCAAATGCGAGGAGGAGAGAGTGTGAACAATCAGAATGCAGAGCAAACAAGACAAGCATTACAA AAATATACCATTGATTTAACTGAACGCGCCAAAACAGGCAAATTAGATCCCGTGATTGGCCGTGATGAAGAAATTCGCCG TACCGTACAAGTATTACAACGCAGAACTAAAAATAATCCCGTATTAATCGGCGAACCCGGAGTGGGTAAAACCGCCATTG TTGAAGGCCTAGCACAACGTATTGTGAATGGAGAAGTACCAGAAGGTTTAAAAAATAAACGCGTATTATCATTAGATATG GGCGCACTTATTGCGGGAGCAAAATATCGAGGTGAATTTGAAGAACGTTTAAAAGCGGTATTAAATGAACTCGCCAAAGA AGAAGGGCAAGTTATTTTATTTATTGACGAAATTCATACGATGGTAGGCGCGGGTAAAACCGATGGCGCAATGGATGCTG GCAACCTATTAAAACCAAGTTTAGCGCGCGGTGAATTACATTGCGTTGGCGCAACTACCCTAGATGAATATCGACAATAT ATTGAAAAAGATGCCGCGCTAGAACGCCGTTTCCAAAAAGTTTTAGTTGATGAACCAAGTGTTGAAGACACCATTGCTAT TTTACGTGGCTTAAAAGAACGTTATGAAATTCATCATCACGTACAAATTACTGATCCAGCCATTGTAGCTGCTGCAACGC TTTCTCATCGTTATATTAGCGATCGCCAATTACCGGATAAAGCGATTGATTTAATTGATGAAGCAGCTTCTAGTTTACGT ATGGAAATAGATTCTAAACCAGAGCCATTAGATAAACTCGAGCGCCGTATTATTCAATTAAAATTGGAACGCCAAGCGCT CCAAAAAGAAAAAGATGAAGCTAGTCGCCAACGGCTTGCAAAATTAGATGAAGAAATGACCGCTAAAGCACAAGAATATT CAGCACTTGAAGAAGTGTGGAAAGCGGAAAAATCTGCTTTACTTGGCACACAACATCTTAAAACAGAATTAGAAAATGCA CGCATTGCAATGGATCAAGCCAAACGTGCAGATAATTTTGAAAAAATGTCAGAATTACAATATGGCACCATTCCAGCATT AGAAAAACAGCTGCAAGACGCCATTAAACGTGAAGAGGAAAACAATGATCACCATTTGTTACGTACTAAAGTAACCGAAG AAGAAATTGCAGAAGTATTATCAAAAGCGACAGGAATTCCGATCACAAAAATGATGGAAGGCGAAAAAGAAAAATTACTG CGTATGGAACAAGTATTACATAGCCGAGTTATCGGGCAAAATGAGGCCGTAGAAGCAGTAGCAAATGCGATTCTCCGTAG CCGTGCAGGGCTTGCTGATCCAAATAAACCCATTGGTTCATTTTTATTCCTTGGGCCAACCGGGGTCGGTAAAACTGAGC TAAGCAAAACATTAGCCAACTTTTTATTTGATGATGAAAATGCCATCGTGCGGATCGATATGTCAGAATTTATGGAAAAA CATAGCGTATCACGCTTAGTCGGGGCACCTCCCGGCTATGTAGGTTATGAACAAGGGGGCTATTTAACTGAAGCAGTTCG TCGCCGTCCATATTCTGTAGTCTTACTAGATGAAGTAGAAAAAGCCCACCCTGATGTGTTTAATATCTTATTACAAGTAT TAGATGACGGGCGTTTAACCGATGGACAAGGTAGAACGGTGGATTTCCGCAACACTGTAGTAATTATGACTTCAAATTTA GGCGCACATTTGATCCAAGAAAATGCAGAAATCACTTATTTAGCGATGAAAGAAATGGTAATGTCAGTGGTAAGTCAACA CTTCCGCCCTGAATTTATCAACCGTATTGATGAAACCGTGGTCTTCCATCCACTCGATCAACAGCATATTCGTGCCATTG CTAATATTCAATTACAGCGGTTGATACGACGGCTTGCTGAACGTGGCTACCAAGTGACAATAAGTGATACCGCCTTAGAT CATATCAGCCAAGCGGGCTTCGACTCTTTATTTGGTGCTCGTCCATTAAAACGTGCGATCCAACAAGAGCTTGAAAACCC TCTTGCACAACAAATATTAAGTGGCAAATTATTGCCAAATAATCCTGTGATTATTGATTATCAAGATAATCACATCATTG CTAAACAATGA Protein sequence : MNFEKFTTKLQEALNEAQSLAVAKDNAYIEPVHLLYALVKQQDGAIAPLFTTLNVSTQTLINELELILNQLPQVTGTTTQ ASQQLIRLLNQTAKLAQQFNDSFISSELFLLAALDDHGSLGKLFKAFGLTKENVTQAISQMRGGESVNNQNAEQTRQALQ KYTIDLTERAKTGKLDPVIGRDEEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDM GALIAGAKYRGEFEERLKAVLNELAKEEGQVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQY IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLR MEIDSKPEPLDKLERRIIQLKLERQALQKEKDEASRQRLAKLDEEMTAKAQEYSALEEVWKAEKSALLGTQHLKTELENA RIAMDQAKRADNFEKMSELQYGTIPALEKQLQDAIKREEENNDHHLLRTKVTEEEIAEVLSKATGIPITKMMEGEKEKLL RMEQVLHSRVIGQNEAVEAVANAILRSRAGLADPNKPIGSFLFLGPTGVGKTELSKTLANFLFDDENAIVRIDMSEFMEK HSVSRLVGAPPGYVGYEQGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GAHLIQENAEITYLAMKEMVMSVVSQHFRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISDTALD HISQAGFDSLFGARPLKRAIQQELENPLAQQILSGKLLPNNPVIIDYQDNHIIAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-110 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_873111.1 | ATP-dependent Clp protease subunit B | VFG2076 | Protein | 8e-121 | 42 |
| clpB | NP_873111.1 | ATP-dependent Clp protease subunit B | VFG2084 | Protein | 9e-114 | 41 |
