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Name : fimD (HD0284) Accession : NP_872874.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Virulence Product : periplasmic fimbrial chaperone Function : - COG functional category : N : Cell motility COG ID : COG3121 EC number : - Position : 219386 - 220126 bp Length : 741 bp Strand : + Note : - DNA sequence : ATGAAATTAAATAAATATATGTCAGCAGTGACAGGAATCATAGTTGGAGTATTTGTTACGAATGCAACTCAAGCTGCGAT TGGATTAGATAGGACTCGGGTTGTTTTTGAAGGTGACAAAAAAGCGATGTCATTAGGTATTTCTAATAACAACAAACAGT TACCATACCTTGCCCAAGCGTGGATTGAAGATGTTAATGGCAAAAAAATTACCTCTCCGTTTGTTGTGTTGCCGCCTATT CAACGAGTAGAGCCTGAGAAATCAAGCCAAGTGAAAATAGAAGCATTACCAGCAATTAACAGTTTACCGCAAGATAGGGA ATCATTATTTTATTCTAATTTACGTGAAATCCCACCTAAAAGTAATAAAGCCAATACATTACAAATTGCCTTGCAAACGC ATGTAAAATTATTTTATCGCCCGAAAGCAATTCTTCCCGAAAAAATGGGTACGCCTTGGCAAGAAAAACTGATTTTACAA AAACAAGGAAATACATTTTTGGTAAAAAATCCAACCGCTTACTATGTCACATTAGTTGATGCAAGTAATGGTAAAACTCA GACTGATATTCAGTTTAATCCAGTAATGTTAGCGCCTTTTAGCGATAGTCCATTAGGCGTAAATGTTAGTACGTTAGGGG CTAAACCTAGTCTGACTTATATTGATGATTATGGTGGTATTAAAGAGTTATCATTTGATTGTAATGGAAATGAATGCCGT GTTGTTAATAAAGACAAATAA Protein sequence : MKLNKYMSAVTGIIVGVFVTNATQAAIGLDRTRVVFEGDKKAMSLGISNNNKQLPYLAQAWIEDVNGKKITSPFVVLPPI QRVEPEKSSQVKIEALPAINSLPQDRESLFYSNLREIPPKSNKANTLQIALQTHVKLFYRPKAILPEKMGTPWQEKLILQ KQGNTFLVKNPTAYYVTLVDASNGKTQTDIQFNPVMLAPFSDSPLGVNVSTLGAKPSLTYIDDYGGIKELSFDCNGNECR VVNKDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| papD | NP_755464.1 | PapD protein | Virulence | PAI I CFT073 | Protein | 2e-46 | 52 |
| prfD | CAD42028.1 | PrfD protein | Virulence | PAI II 536 | Protein | 1e-55 | 52 |
| pixD | CAE85158.1 | PixD protein | Not tested | PAI V 536 | Protein | 2e-55 | 52 |
| papD | YP_854253.1 | pilus assembly protein chaperone PapD | Virulence | PAI I APEC-O1 | Protein | 2e-55 | 50 |
| papD | AAL67413.1 | PapD | Virulence | PAI II CFT073 | Protein | 2e-55 | 50 |
| papD | AAZ04423.1 | P pilus chaperone | Virulence | PAI I APEC-O1 | Protein | 1e-55 | 50 |
| papD_2 | NP_757033.1 | PapD protein | Virulence | PAI II CFT073 | Protein | 3e-55 | 50 |
| papD | YP_002414014.1 | Chaperone protein PapD | Not tested | Not named | Protein | 3e-55 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimD | NP_872874.1 | periplasmic fimbrial chaperone | VFG0885 | Protein | 9e-47 | 52 |
| fimD | NP_872874.1 | periplasmic fimbrial chaperone | VFG1547 | Protein | 7e-56 | 52 |
| fimD | NP_872874.1 | periplasmic fimbrial chaperone | VFG0896 | Protein | 1e-55 | 50 |
