Gene Information

Name : ssb (HD1285)
Accession : NP_873718.1
Strain : Haemophilus ducreyi 35000HP
Genome accession: NC_002940
Putative virulence/resistance : Virulence
Product : single-stranded DNA-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 1046317 - 1046847 bp
Length : 531 bp
Strand : -
Note : binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA

DNA sequence : 
ATGGCAGGAATTAATAAAGTGATTATCGTCGGCAATTTAGGCAACGATCCTGAAATGCGAACCATGCCAAATGGCGAAGC
CGTTGCTAACATTAGCGTAGCAACGAGTGAAAGCTGGACAGACAAAAACACAGGCGAACGCCGTGAAGTAACTGAATGGC
ATCGTATTGTATTTTATCGCCGTCAAGCAGAAGTCGCTGGGCAATATTTACGTAAAGGCTCTCAAGTTTATGTAGAAGGA
CGCTTAAAAACGCGCAAATGGCAAGATCAAAATGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTATTACAAAT
GCTAGGTGGACGTAATCAAGCCGGTGATGTTGCTACTCATCAAAATCAAGCGGGTTGGAATGCACCAGCTTCCACACAAA
ATAATTATAATCAAGGCGCTAGCAATTATAATCCTAACCAAACACAAGCGTATTCAGCACCTCAGACAAATCGTACTAAA
CCGGCGGCTGAGTCTGTAATGGATAACTTTGATGATGATATTCCATTCTAA

Protein sequence : 
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQAGDVATHQNQAGWNAPASTQNNYNQGASNYNPNQTQAYSAPQTNRTK
PAAESVMDNFDDDIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 1e-48 66
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 3e-35 52
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 3e-35 52
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 2e-35 52
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 4e-29 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssb NP_873718.1 single-stranded DNA-binding protein VFG0576 Protein 1e-34 56