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Name : topB2 (HD1276) Accession : NP_873711.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 1038166 - 1040085 bp Length : 1920 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGATGCGAGTGTTTTTAGCCGAAAAACCGAGTTTAGCCCGTGCGATTGCTGAAGTATTGCCTAAACCTCATATCCGAGG CGATGGTTATATTCAATGTGGTGAACATGATTATGTGACTTGGTGTATAGGCCATTTACTTGAACAGGCAGAGCCAGATG CATATGATGAACGTTTTAAAACTTGGCGAATGGAGCATTTACCGATTATTCCACAGCAATGGAAATTAATTGCTAAAAAA CAAACCGCTAAACAGCTTAAAGTGGTCGAAAAATTAGTTAAGAAAGCAGAAATATTAGTCAATGCGGGCGACCCTGATAG AGAAGGCCAATTATTAGTTGATGAAGTATTTAATTATTTAAATGTGCCAGCGAGTAAAAAAAGCCAAATACAACGCTGTC TAGTTAGTGACCTTAATCCAACTGCAGTCAGTAAGGCGATCAATAAATTACAAAATAATTGTGATTTTATACCGCTTGCC ACTTCTGCGTTAGCACGCGCAAGAGCGGATTGGTTGTATGGCATTAATATGACTAGGGCCTATACTCTACAAGGCCGTTG GGTTGGTTATCAAGGCGTGCTTTCAGTCGGGCGCGTACAAACGCCTGTATTAGGTTTGATTGTACGGCGTGATCTTGAGA TCGAACATTTTACACCTAAAGATTATTTTGAAGTTTTAGCACATATCATTGTGCCAACCACACAAGAAAGATTTACCGCC CACTGGCAGCCAAGTAAAGCGTGTGAAGATTACCAAGATGAAGAAGGAAGAGTACTCTCGCGCGCATTGGTGGAAAATGT TGTTAAACGTATCAGTGATCAAACCGCTTGCGTGACTGATTATCAAGATAAAACCGAAAGTGAAATAGCGCCTTTACCTT ATTCGCTTTCAGCATTACAGATTGATGCCGCACGCCGTTATGGTCTATCGGCTCAAGCAGTATTAGATATTTGCCAAACC TTATATGAAACCCACAAATTAATTACTTATCCTCGTTCAGATAATCGTTATTTACCAAATGAACATTATAATGAACGATT TAACGTCGTGGCAGCGATTGCACATCATCTAACAGAATATCAACAAAAACCCGAAGTCGTTAACTTAGCATTACGTGGCC GTTGTTGGAATGATAAAAAAATAGAAGCACATCACGCCATTATTCCGACCGCTAGGCAAGGCAATCTGCGACTCACTGAA AATGAAAAAAGGATTTATCGCTTGATCGCTTGTCAATATTTAATGCAATTTTGCCCAGATGCAGAATATAGCAAAAGAAA AATTACTTTAGATATTGCGGGAGGCACGTTTATTGCTCAAGCTAGAAATTTAGTGACTGCAGGTTGGAAAGCCTTATTAG GTAAGGAAGACTGCGATGAAATGATTGAACCATTGTTACCCGCAGTACAGAAAGCACAACGACTGCATTGTGAGAAAAGG GAAATTATCAGTAAAAAAACACAACTGCCACGCCATTTCACTGATGCAAGTTTGTTATCCGCTATGACAGGTATTGCACG TTTTGTGCAAGATAAACAGCTTAAAAAAATACTACGTGAAACAGATGGTTTGGGTACAGAAGCCACTCGTGCAGGTATTA TTGAATTGCTCTTTAAACGCGGTTTTGTTACCAAAAAAGGGCGTAATATTCAAAGTACTGAAACAGGACGAGTTTTAATT AGCGCCTTGCCAGATATAGCGACTCAACCAGATATGACTGCCCAATGGGAAATGCAACTGAAACAAATTAGCCAAAAACA AGTCTCTTACCAACAATTTATGCACCAATTAACGACTAAATTACCCGAGCTACTGCATACAGACCGACAAAAATTGCAAA AACTCAACATAATTACACCGCTTAAGCTACCTGCTAAGCGAACACATACTAAAGCATCAATAATGGCTGATGAAAAATAA Protein sequence : MMRVFLAEKPSLARAIAEVLPKPHIRGDGYIQCGEHDYVTWCIGHLLEQAEPDAYDERFKTWRMEHLPIIPQQWKLIAKK QTAKQLKVVEKLVKKAEILVNAGDPDREGQLLVDEVFNYLNVPASKKSQIQRCLVSDLNPTAVSKAINKLQNNCDFIPLA TSALARARADWLYGINMTRAYTLQGRWVGYQGVLSVGRVQTPVLGLIVRRDLEIEHFTPKDYFEVLAHIIVPTTQERFTA HWQPSKACEDYQDEEGRVLSRALVENVVKRISDQTACVTDYQDKTESEIAPLPYSLSALQIDAARRYGLSAQAVLDICQT LYETHKLITYPRSDNRYLPNEHYNERFNVVAAIAHHLTEYQQKPEVVNLALRGRCWNDKKIEAHHAIIPTARQGNLRLTE NEKRIYRLIACQYLMQFCPDAEYSKRKITLDIAGGTFIAQARNLVTAGWKALLGKEDCDEMIEPLLPAVQKAQRLHCEKR EIISKKTQLPRHFTDASLLSAMTGIARFVQDKQLKKILRETDGLGTEATRAGIIELLFKRGFVTKKGRNIQSTETGRVLI SALPDIATQPDMTAQWEMQLKQISQKQVSYQQFMHQLTTKLPELLHTDRQKLQKLNIITPLKLPAKRTHTKASIMADEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-99 | 41 |
