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Name : serS (HD1133) Accession : NP_873606.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 901412 - 902719 bp Length : 1308 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATCGACCAAAATTTACTTCGCACTAATTTAGACGATGTTGCAAATGCGCTCAAATTAAAACGTAATTTCATCTTAGA TGTTAACCAAGTAAAAGCACTTGAAGAACAACGTAAAACATTACAAGTCACAACGGAAACCTTGCAAGCTGAACGTAATG CTCGTTCGAAAAATATTGGCGCAGCTAAAGCACGTGGTGAAAACATTAGCCAACTATTAGCTGAAGTAGACACTATGGGT AATCAGCTTGAGATAGCAAAAACAGAATTAGATAAAGTACAAAGTGAAATACGTGAATTATTGTTAACTATTCCAAATTT ACCGGCGGAAGAAGTCCCGCTTGGTAAAGATGATAGCCAAAATAAAGAAATATTACGCTGGGGAACGCCTCGTCAATTTG ATTTTGAAATCAAAGATCACGTCACGCTTGGTGAAAACTTAAAAGGCATCGATTTTCCTACGGGCGTCAAGTTAACCGCA AGTCGCTTTGTTGTAATGAAAGACAAAATTGCCCGCTTACACCGTGCATTAGCACAATTTATGTTAGATCTACATAGCGA ACAACACGGTTATATGGAAGTAAATGTCCCCTTATTGGTCAATCACGACACCTTGTATGGCACAGGTCAACTGCCAAAAT TTGGTGAAGATCTATTCCATACTCAACCATTAACTGGACAAGATCCTAATGAAGTGCAACGCCCTTATGGTTTAATTCCC ACCGCTGAAGTTCCGCTAACCAATCTCGTGCGTGATGAAATTGTGGATGAAGATAGTCTGCCAATTAAACTCGTTGCCCA TACACCTTGTTTCCGTGCAGAAGCAGGTTCTTATGGACGTGATACACGCGGTCTAATACGTATGCATCAATTTGAAAAAG TCGAATTAGTACAAATTGTGGCACCGGAAAAATCCATGGAAGCACTTGAAGAATTAACAGGTCAAGCAGAAAAAATCTTA CAACTACTCCATTTACCTTACCGTAAAGTATTACTATGCACAGGCGATATGGGCTTTGGCTCAGCAAAAACATATGACTT AGAAGTCTGGTTACCGGCACAAAATACTTACCGTGAAATTTCTTCTTGCTCAAATATGTGGGATTTCCAAGCTCGTCGGA TGTCTGCTCGCTGTAAAGCAAAAGGCGATAAAAAAACACGTTTAGTTCATACCTTAAATGGCTCAGGGCTAGCAGTTGGA CGGACGTTAGTCGCTGTATTAGAAAATTATCAAAATGCCGACGGCTCGATCACTATCCCAGAAGTATTGCGTCCGTATAT GGCTGGACAAGAAGCAATTACCGGCTAA Protein sequence : MIDQNLLRTNLDDVANALKLKRNFILDVNQVKALEEQRKTLQVTTETLQAERNARSKNIGAAKARGENISQLLAEVDTMG NQLEIAKTELDKVQSEIRELLLTIPNLPAEEVPLGKDDSQNKEILRWGTPRQFDFEIKDHVTLGENLKGIDFPTGVKLTA SRFVVMKDKIARLHRALAQFMLDLHSEQHGYMEVNVPLLVNHDTLYGTGQLPKFGEDLFHTQPLTGQDPNEVQRPYGLIP TAEVPLTNLVRDEIVDEDSLPIKLVAHTPCFRAEAGSYGRDTRGLIRMHQFEKVELVQIVAPEKSMEALEELTGQAEKIL QLLHLPYRKVLLCTGDMGFGSAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTLNGSGLAVG RTLVAVLENYQNADGSITIPEVLRPYMAGQEAITG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-103 | 54 |
