Gene Information

Name : tssB (GSU3172)
Accession : NP_954213.1
Strain : Geobacter sulfurreducens PCA
Genome accession: NC_002939
Putative virulence/resistance : Virulence
Product : type VI secretion system needle sheath protein TssB
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3481193 - 3481678 bp
Length : 486 bp
Strand : +
Note : -

DNA sequence : 
ATGTCGAATGAAGCATCCGTAGCACCGAAGGAACGGGTGAACATCGTCTACCGTCCCGCCGATGGCGAAGGGCGCGAGGA
AGTGGAGCTTCCCCTTAAAATCCTGGTGTTAGGGGACTTTACCGGGCAACCGGACGAGCGGCCCGTGGAGAAGCGGGACC
CGGTGCCAGTGGACAAAGAAAACTTCAGCGAGGTCATGAAGGCCCAGAGAATCATGCTGAACATCGCCGTCTCCAACCGG
CTTTACGATGCACCCGACGAGGAGCTGCCGGTGAAGCTGAAAATGGAATCCCTGAGAGATTTCGGCCCGGAGGCCATTGT
GGAGCAGGTCCCGGAGATGAAACGCCTGTTGGAGTTGCGCGAGGCACTGCGGGCGCTGAAGGCTCCCCTCTCCAACATTC
CGGACTTCCGGAGAAAAATTCAGGAACTGGTCACTGACGATGCCGCCCGCGCCAAGCTGCTGGCTGAAATAGGGATCGAA
GGGTAA

Protein sequence : 
MSNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKENFSEVMKAQRIMLNIAVSNR
LYDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELREALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIE
G

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-25 48
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 3e-22 43
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 2e-22 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tssB NP_954213.1 type VI secretion system needle sheath protein TssB VFG2474 Protein 1e-36 55
tssB NP_954213.1 type VI secretion system needle sheath protein TssB VFG2092 Protein 2e-34 54