Gene Information

Name : GSU2593 (GSU2593)
Accession : NP_953639.1
Strain : Geobacter sulfurreducens PCA
Genome accession: NC_002939
Putative virulence/resistance : Unknown
Product : transposase of ISGsu6, IS21 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 2858360 - 2859385 bp
Length : 1026 bp
Strand : +
Note : -

DNA sequence :
ATGATCGGAAAGGAAGAGTGTATGGAAGTCAGAATTCTCAAGAAGCAGGGCAAGAGCATCCGGGAGATCTCGCGTATCAC
CGGACTTTGCCGCAACACGGTCAGGAAATTCCTCAGGTCGACCGCTGATCCCAGGTACAAAGAACGAGCGAAGCGACCGG
GGAAGCTTGACCCATTTAAAGCGTTTCTCGAAGAACGGGTGAAGGCGGCTCTGCCGCATCGGATTCCCGCGCCGGTGCTT
GCTCGGGAGATCAAAAGCTTTGGCTACGATGGCGGCGAACGCACTGTCAGAACGTTTTTGGCGACCCTTTATTCCCGCAT
CACGCCGGAACCCGTTGTCCGGTTCGAAACGGAGCCAGGCAAGCAGATGCAAGCCGACTGGTGCGAACTGCGCAAGGGCA
AGCACCCGCTGTACGCATTCGTTGGAACGCTTGGTTTCAGTAGAGATTCGTTCGTTGTCTTCACCACCAGCCAAGCGTTC
GACGTCCTTCGGGAATGCCACGAGATGGCATTCTCCTTCTTCGGCGGGGTCCCGCGCGAAGTGCTCTATGACAACATGAA
GACCGTCGTGCTGGAGCGAAACGCCTTCGGCGAGGGCAACCACCGTTTCCACACCGGCCTGTGGGACACGGCAAAGCATT
TCGGGTACATCCCCCGGTTGTGCAAGCCGTACCGGGCCAAGACCAAGGGAAAGGTTGAGCGGTTCAACCGCTACCTGCGG
TACAGCTTCTACTACCCGTTGGTTTCGCGCCTGAAGCAGGCAGGACTAACTCTCGATGTCGCAACCGCGAACATCGAGGT
CAGAAAGTGGCTCAACGAAGTAGCCAACTGCCGCATCCATGGGGAGACCGGCGAACGCCCCTGCGATCGGCTCGAGATCG
AGCGGTCAGCGATGCTGCCGCTGCCGCCAAGGCTTGCAGTCGAGCCGGACAAGCCGCAAGTCATTGCTGCCATGCCGTGG
CCGGTTATTCCCCTTCAGCGCCCCGCCTCCTTCTACGATCAGATCCTTCAGGAGGGGCGGCTATGA

Protein sequence :
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFKAFLEERVKAALPHRIPAPVL
AREIKSFGYDGGERTVRTFLATLYSRITPEPVVRFETEPGKQMQADWCELRKGKHPLYAFVGTLGFSRDSFVVFTTSQAF
DVLRECHEMAFSFFGGVPREVLYDNMKTVVLERNAFGEGNHRFHTGLWDTAKHFGYIPRLCKPYRAKTKGKVERFNRYLR
YSFYYPLVSRLKQAGLTLDVATANIEVRKWLNEVANCRIHGETGERPCDRLEIERSAMLPLPPRLAVEPDKPQVIAAMPW
PVIPLQRPASFYDQILQEGRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 2e-78 51
y2411 NP_669718.1 transposase Not tested HPI Protein 2e-78 51
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 2e-78 51
unnamed CAA21403.1 - Not tested HPI Protein 2e-78 51
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-78 51
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-78 51
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 7e-79 49
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 7e-79 49
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 7e-79 49
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 7e-79 49
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 2e-78 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GSU2593 NP_953639.1 transposase of ISGsu6, IS21 family VFG1626 Protein 4e-79 49
GSU2593 NP_953639.1 transposase of ISGsu6, IS21 family VFG1607 Protein 4e-79 49
GSU2593 NP_953639.1 transposase of ISGsu6, IS21 family VFG1514 Protein 4e-79 49
GSU2593 NP_953639.1 transposase of ISGsu6, IS21 family VFG1461 Protein 1e-78 48