Gene Information

Name : GSU2121 (GSU2121)
Accession : NP_953170.1
Strain : Geobacter sulfurreducens PCA
Genome accession: NC_002939
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 2339486 - 2339992 bp
Length : 507 bp
Strand : +
Note : -

DNA sequence :
ATGCGCTTCGCCACTCTAGTTTTCCTACTTTGCATATCTGTCGGTTCATCAAATCCGGCATCCGCCTTCTGTTTTGAAGA
AGCCGGTAACAGGTACGGAATCTCGCCTCAACTCCTCTATGCAATCTCCAAGGGGGAAAGCAGCTTCAATCCCCTGGCAA
TCAATTACAACTCAAACGGCACGTACGATTACGGCCTCATGCAGATCAATTCCTCATGGGAACCGGCTCTACGCAAACTC
GGCATCTCGTGGAACAACCTTGCTGACCCATGCACCAATGTCATGGTTGGCGCCTGGGTTCTTTCCCAATGCATTCAGGA
CTACGGATACACCTGGCAGGCTGTCGGCTGCTACAACTCCCGCACACCATCAAAACGTAATCGGTACGCCGCCAGAGTAG
CTCGCATCATCAAACACGAACTATACCGTCCGCAACCTGTTCAGGTGGCTTCAGCAATCAACTTTGCCACTCCTTGGGAA
GAAGCTTTTGGCCGTGAACACCGCTGA

Protein sequence :
MRFATLVFLLCISVGSSNPASAFCFEEAGNRYGISPQLLYAISKGESSFNPLAINYNSNGTYDYGLMQINSSWEPALRKL
GISWNNLADPCTNVMVGAWVLSQCIQDYGYTWQAVGCYNSRTPSKRNRYAARVARIIKHELYRPQPVQVASAINFATPWE
EAFGREHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
etgA AFO66324.1 putative lytic transglycosylase Not tested SESS LEE Protein 1e-13 43
etgA AFO66404.1 putative lytic transglycosylase Not tested SESS LEE Protein 1e-13 43
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 7e-18 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 7e-18 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 5e-18 42
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 4e-18 42
unnamed AAK26704.1 unknown Not tested LEE Protein 5e-11 41
ECO103_3629 YP_003223486.1 hypothetical protein Not tested LEE Protein 8e-11 41
ECO26_5260 YP_003232142.1 hypothetical protein Not tested LEE Protein 8e-11 41
unnamed AAL57531.1 unknown Not tested LEE Protein 5e-11 41
st13 CAC81851.1 ST13 protein Not tested LEE II Protein 5e-11 41
unnamed CAI43885.1 hypothetical protein Not tested LEE Protein 5e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GSU2121 NP_953170.1 lytic transglycosylase VFG0539 Protein 1e-18 42