Name : pilB (GSU1491) Accession : NP_952542.1 Strain : Geobacter sulfurreducens PCA Genome accession: NC_002939 Putative virulence/resistance : Virulence Product : type IV pilus biogenesis ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1634840 - 1636546 bp Length : 1707 bp Strand : + Note : - DNA sequence : ATGCAGGCTAGCAGACTGGGAGAACTCCTGGTTCGAAACAATATCATCACCAAGGAACAGCTTGCCAAGGCACTGGACGA GCAACGAACCTCCGGCGGCCAACAGCGCCTTGGCTCCATCCTCGTCAAGAACGGCCTTGTCACTGAGCCCGATCTCACCA CGTTCCTCTCCAAGCAGTACGGTGTCCCCTCCATCAATCTGAGTGAATTCGAAGCCGATATGGCGGTGGTCAAGATCATC CCCGCCGACGTGGCCCAGAAGTACCAGATCGTCCCGGTGAACAGGGCCGGTTCGACCCTGATCATTGCCATGGCTGACCC GTCGAACATCTTCGCCATCGACGACATCAAGTTCATGACCGGCTACAACGTGGAGGTGGTCGTCGCTTCCGAGTCGTCCA TCAAGACTGCCATCGACAAGTACTATGACCAGTCAGCGTCTCTGGCCGACGTCATGAACGACCTGGAGATGGACGATCTG GAGGTTATCGGCGAGGACGAGGATGTAGACGTTTCTTCCCTCGAACGGGCGACCGAGGATGCGCCGGTCGTCAAGCTCGT GAACCTGATCCTCACCGACGCCATCAAGAAGAAGGCGAGTGATATCCATATCGAGCCCTATGAGCGGACCTTCCGGGTGC GCTATCGGATCGACGGCGTCCTCTACGAAGTCATGAAGCCCCCCCTGAAACTGAAAAACGCCATCACGTCGCGGATCAAG ATCATGGCTGACCTGGATATTGCCGAACGGCGGCTTCCCCAGGACGGCCGCATCAAGATCAAAATGGGTGGCGGGCAGGA CATGGACTACCGGGTGTCGGTCCTGCCGACCCTGTTCGGCGAGAAGGTGGTTCTGCGACTCCTGGACAAGTCGAACCTCC AGCTCGACATGACCAAGCTGGGCTACGAGCCCACGGCGTTGAGCTACTTCAAGGAGGCGATTCACAAGCCCTTCGGCATG GTGCTGGTGACCGGACCCACGGGGAGCGGCAAGACGGTTTCCCTCTATTCGGCGCTTTCCGAGCTCAACAAGACTACCGA GAACATCTCCACGGCCGAAGACCCGGTGGAGTTCAACTTCGCCGGCATCAACCAGGTGCAGATGCACGAAGATATCGGTC TTACCTTTGCCGCCGCGCTCCGCTCCTTCCTGCGTCAGGACCCGGACATCATCATGATCGGAGAGATCCGGGACTTCGAG ACGGCCGAGATCGCCATCAAGGCTGCGCTTACCGGTCACTTGGTTCTCTCTACCCTTCACACCAACGATGCCCCGGCCAC CATCAACCGGCTGTTGAACATGGGGGTCGAGCCGTTTCTTGTTGCCTCGGCGGTGAACCTGATTACCGCCCAGCGTCTTG CCCGGCGGGTCTGCTCCGAGTGCAAGGCCGTGGAGGAGATACCGATCCAGGCTTTGATCGATGCAGGCGTCCCTCCCGAG GAAGCTCCTGAATATGTCTGCTTTCGCGGCACCGGTTGTGCCAAGTGCAACAACACCGGCTACAAGGGGCGCGTCGGCTT CTATCAGGTAATGCCCATGCTGGAGGAAATCAGGGAGCTGATTCTCAACGGCGCCAATACGGCCGAAATCAAACGCGAAT CCATGCGCCTGGGCATCAAGACCATGCGCCAATCGGGCCTGACCAAACTCAAGGAGGGGGTTACCTCCTTTGAGGAGGTG CTACGGGTTACCGTGGCTGACGACTAA Protein sequence : MQASRLGELLVRNNIITKEQLAKALDEQRTSGGQQRLGSILVKNGLVTEPDLTTFLSKQYGVPSINLSEFEADMAVVKII PADVAQKYQIVPVNRAGSTLIIAMADPSNIFAIDDIKFMTGYNVEVVVASESSIKTAIDKYYDQSASLADVMNDLEMDDL EVIGEDEDVDVSSLERATEDAPVVKLVNLILTDAIKKKASDIHIEPYERTFRVRYRIDGVLYEVMKPPLKLKNAITSRIK IMADLDIAERRLPQDGRIKIKMGGGQDMDYRVSVLPTLFGEKVVLRLLDKSNLQLDMTKLGYEPTALSYFKEAIHKPFGM VLVTGPTGSGKTVSLYSALSELNKTTENISTAEDPVEFNFAGINQVQMHEDIGLTFAAALRSFLRQDPDIIMIGEIRDFE TAEIAIKAALTGHLVLSTLHTNDAPATINRLLNMGVEPFLVASAVNLITAQRLARRVCSECKAVEEIPIQALIDAGVPPE EAPEYVCFRGTGCAKCNNTGYKGRVGFYQVMPMLEEIRELILNGANTAEIKRESMRLGIKTMRQSGLTKLKEGVTSFEEV LRVTVADD |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-89 | 46 |
gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-89 | 46 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG1880 | Protein | 1e-119 | 46 |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG0112 | Protein | 1e-121 | 46 |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG0182 | Protein | 3e-92 | 46 |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG2048 | Protein | 3e-89 | 46 |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG1876 | Protein | 8e-90 | 45 |
pilB | NP_952542.1 | type IV pilus biogenesis ATPase PilB | VFG0233 | Protein | 2e-107 | 44 |