|
Name : DVU3176 (DVU3176) Accession : YP_012386.1 Strain : Desulfovibrio vulgaris Hildenborough Genome accession: NC_002937 Putative virulence/resistance : Virulence Product : UDP-glucose/GDP-mannose dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 3332256 - 3333578 bp Length : 1323 bp Strand : + Note : identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 DNA sequence : ATGAACGAACAGACATCTTTCGACGACATCGCATCCGGTCGCACCGCTGTGGCGGTGGTGGGCCTCGGCTATGTGGGGCT ACCCCTCGCCGTTGCCCTCGCGCGCCACTTCCGCGTCATCGGCTTCGACATCCAGCAGAACCGGGTGGATGAACTCTCTT CCGGGCACGACCGCACGGGCGAGGTCGACGACGCCAGCCTCGCCGCCACACCCGCCCTCTTCACCACGGACGCCGCCCGC CTCGGCGAGGCAGGGGTCATCATCGTGGCGGTGCCCACCCCCATCGACAACCACCGCAACCCCGACCTCGGCCCGGTGGA GAAGTCCTCCATCACCGTGGGCCGCCACATGAAGGCCGGTTGTGTTGTCGTGTACGAATCGACGGTCTATCCCGGTGTCA CCGAAGAGGTCTGTGTCCCCATCCTCGAACGCGAATCGGGCCTCGTCTTCGGACGTGACTTCACCGTGGGCTACTCGCCG GAACGCATCAACCCCGGCGACAAGGTGCACACGCTGGAGACCATCATGAAGATCGTCTCCGGCAGCGACGCCGCAACCGC AGACCTGCTGGAAAAGGTCTACGGCAGCGTGGTCACGGCGGGCATCCACAAGGCGGCATCCATCAAGGTGGCTGAAGCGG CCAAGGTCATCGAGAACACCCAGCGCGACCTCAATATCGCGCTCATGAACGAACTCTCGATCATCTTCGACCGCCTCGGC ATCGACACCCTCGAGGTGCTCGAAGCCGCAGGCACCAAATGGAACTTCCTGCCCTTCCGGCCCGGTCTGGTGGGCGGTCA CTGCATCGGCGTCGACCCGTACTACCTGACCTTCAAGGCTGAAGAACTGGGCTACCACCCGCAGGTCATCCTCGCCGGAC GTCGCATCAACGACGGCATGGGCAAGCATGTGGCCGAAATGACCGTGAAGCGCATGATACGCTCCGGTTGCCGGGTGGCG GGGGCCCGCGTGGGCGTGCTGGGCCTCACCTTCAAGGAGAACGTGCCCGACCTGCGCAACACCCGCGTCATCGATGTGGT TCGCGAACTCGAAGAGTACGGCGTGACCGTACTGGTGCACGACCCCTTCGCCGACCCGGCGGAGGCCATGCACGAATACG GGCTCACCCTCGCGCACCTCAAGGATTTCCAGCAACTCGACGCGCTGGTCGTCACCGTGCCCCACGATGTCTACCGCGCC ATGGACCTTGTGCAGGTCCGTCGCTGGTGCGCGTCCTCCGGGACGCCGCCCCTGCTTGACGTACGCGGCACGTTCAACCC CGGCACGGCCCGCGAGGCGGGCTTCGACTACTGGAGACTCTAG Protein sequence : MNEQTSFDDIASGRTAVAVVGLGYVGLPLAVALARHFRVIGFDIQQNRVDELSSGHDRTGEVDDASLAATPALFTTDAAR LGEAGVIIVAVPTPIDNHRNPDLGPVEKSSITVGRHMKAGCVVVYESTVYPGVTEEVCVPILERESGLVFGRDFTVGYSP ERINPGDKVHTLETIMKIVSGSDAATADLLEKVYGSVVTAGIHKAASIKVAEAAKVIENTQRDLNIALMNELSIIFDRLG IDTLEVLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLTFKAEELGYHPQVILAGRRINDGMGKHVAEMTVKRMIRSGCRVA GARVGVLGLTFKENVPDLRNTRVIDVVRELEEYGVTVLVHDPFADPAEAMHEYGLTLAHLKDFQQLDALVVTVPHDVYRA MDLVQVRRWCASSGTPPLLDVRGTFNPGTAREAGFDYWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-105 | 58 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 5e-96 | 56 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 5e-96 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DVU3176 | YP_012386.1 | UDP-glucose/GDP-mannose dehydrogenase | VFG0431 | Protein | 2e-96 | 56 |
