Gene Information

Name : DVU2588 (DVU2588)
Accession : YP_011800.1
Strain : Desulfovibrio vulgaris Hildenborough
Genome accession: NC_002937
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2712233 - 2712913 bp
Length : 681 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAACATACTCATCGTCGAAGACGACGCCACCATAGCCGCGACGACGGCGCAGGCGCTTGTGGACGCGGGAAACGAGGC
GATGGTGGCCTCCACGCTGGATGAAGCCAGAGAGAAGGCGGGCAGCGGGGCGTGGGACGCCATCGTTCTCGACCTCATGC
TGCCGGATGGTGATGGTGCCGACCTGCTGCACGAATTGCGTGAGCGGGGCGACACCGTGCCTGTTCTGGTGCTCAGCGCC
CGTCAATCCGTAGAGGACAGGGTGCGGCATCTCGAAAGCGGCAGTGACGACTATCTCACCAAGCCCTTCGCCATCTCCGA
GTTGCTGGCGCGGCTTGCGGCGTTGCGCCGTCGCAGTGCGGGCAGGCCCATGTCGCTCACCCATTCGGGGCTCATGCTCG
ACCTCGTGCACCGCAAGGCCTATCGCGACGGGTGCGAGATGGACCTCAAGGGGCGAGAGTTCGCGCTGCTGCTGTTGCTC
ATGGAGAACGCGGGCACGGTGGTCACCCGTAACATGATCGTGAAGCGGGTGTGGGGCTATGACTTCATGCCCGGTTCCAA
CATCATCGACGTGCAGATATGCCAGCTTCGCGAGAAGACGGAGCGCAACGGCGCCCCGAGGGTCATTCATACCATGCGCG
GCGTGGGTTATGTCTTCGGACTCGCAGACGCCGTGGCATAG

Protein sequence : 
MNILIVEDDATIAATTAQALVDAGNEAMVASTLDEAREKAGSGAWDAIVLDLMLPDGDGADLLHELRERGDTVPVLVLSA
RQSVEDRVRHLESGSDDYLTKPFAISELLARLAALRRRSAGRPMSLTHSGLMLDLVHRKAYRDGCEMDLKGREFALLLLL
MENAGTVVTRNMIVKRVWGYDFMPGSNIIDVQICQLREKTERNGAPRVIHTMRGVGYVFGLADAVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DVU2588 YP_011800.1 DNA-binding response regulator BAC0197 Protein 7e-30 41
DVU2588 YP_011800.1 DNA-binding response regulator BAC0083 Protein 1e-29 41
DVU2588 YP_011800.1 DNA-binding response regulator BAC0638 Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DVU2588 YP_011800.1 DNA-binding response regulator VFG1390 Protein 1e-30 44
DVU2588 YP_011800.1 DNA-binding response regulator VFG0596 Protein 6e-25 44
DVU2588 YP_011800.1 DNA-binding response regulator VFG1389 Protein 9e-29 43